Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03455 and ABIE40_RS03460 are separated by 39 nucleotides ABIE40_RS03460 and ABIE40_RS03465 are separated by 292 nucleotides ABIE40_RS03465 and ABIE40_RS03470 are separated by 2 nucleotides ABIE40_RS03470 and ABIE40_RS03475 are separated by 0 nucleotides
ABIE40_RS03455: ABIE40_RS03455 - MBL fold metallo-hydrolase, at 686,630 to 687,619
_RS03455
ABIE40_RS03460: ABIE40_RS03460 - SAM-dependent methyltransferase, at 687,659 to 688,270
_RS03460
ABIE40_RS03465: ABIE40_RS03465 - IMP dehydrogenase, at 688,563 to 690,047
_RS03465
ABIE40_RS03470: ABIE40_RS03470 - hypothetical protein, at 690,050 to 690,601
_RS03470
ABIE40_RS03475: ABIE40_RS03475 - LysR family transcriptional regulator, at 690,602 to 691,516
_RS03475
Position (kb) 688
689
690
691 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 687.602 kb on + strand at 687.602 kb on + strand at 687.602 kb on + strand at 687.602 kb on + strand at 687.602 kb on + strand at 687.602 kb on + strand at 687.602 kb on + strand at 687.603 kb on - strand at 687.603 kb on - strand at 687.603 kb on - strand at 687.603 kb on - strand at 687.603 kb on - strand at 687.613 kb on + strand at 687.711 kb on + strand at 687.712 kb on - strand at 687.712 kb on - strand at 687.813 kb on + strand, within ABIE40_RS03460 at 687.813 kb on + strand, within ABIE40_RS03460 at 687.814 kb on - strand, within ABIE40_RS03460 at 687.814 kb on - strand, within ABIE40_RS03460 at 687.826 kb on - strand, within ABIE40_RS03460 at 687.826 kb on - strand, within ABIE40_RS03460 at 687.826 kb on - strand, within ABIE40_RS03460 at 688.018 kb on + strand, within ABIE40_RS03460 at 688.237 kb on + strand at 688.237 kb on + strand at 688.237 kb on + strand at 688.238 kb on - strand at 688.238 kb on - strand at 688.238 kb on - strand at 688.301 kb on + strand at 688.301 kb on + strand at 688.301 kb on + strand at 688.301 kb on + strand at 688.301 kb on + strand at 688.302 kb on - strand at 688.302 kb on - strand at 688.400 kb on + strand at 688.400 kb on + strand at 688.461 kb on + strand at 690.185 kb on + strand, within ABIE40_RS03470 at 690.185 kb on + strand, within ABIE40_RS03470 at 690.185 kb on + strand, within ABIE40_RS03470 at 690.185 kb on + strand, within ABIE40_RS03470 at 690.185 kb on + strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.186 kb on - strand, within ABIE40_RS03470 at 690.198 kb on - strand, within ABIE40_RS03470 at 690.259 kb on + strand, within ABIE40_RS03470 at 690.259 kb on + strand, within ABIE40_RS03470 at 690.275 kb on + strand, within ABIE40_RS03470 at 690.275 kb on + strand, within ABIE40_RS03470 at 690.276 kb on - strand, within ABIE40_RS03470 at 690.276 kb on - strand, within ABIE40_RS03470 at 690.276 kb on - strand, within ABIE40_RS03470 at 690.276 kb on - strand, within ABIE40_RS03470 at 690.276 kb on - strand, within ABIE40_RS03470 at 690.419 kb on + strand, within ABIE40_RS03470 at 690.419 kb on + strand, within ABIE40_RS03470 at 690.419 kb on + strand, within ABIE40_RS03470 at 690.420 kb on - strand, within ABIE40_RS03470 at 690.420 kb on - strand, within ABIE40_RS03470 at 690.420 kb on - strand, within ABIE40_RS03470 at 690.420 kb on - strand, within ABIE40_RS03470 at 690.420 kb on - strand, within ABIE40_RS03470 at 690.599 kb on + strand at 690.599 kb on + strand at 690.599 kb on + strand at 690.599 kb on + strand at 690.705 kb on + strand, within ABIE40_RS03475 at 690.706 kb on - strand, within ABIE40_RS03475 at 690.706 kb on - strand, within ABIE40_RS03475 at 690.931 kb on - strand, within ABIE40_RS03475 at 690.999 kb on + strand, within ABIE40_RS03475 at 691.000 kb on - strand, within ABIE40_RS03475 at 691.000 kb on - strand, within ABIE40_RS03475 at 691.000 kb on - strand, within ABIE40_RS03475
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 687,602 + +0.2 687,602 + -3.3 687,602 + -0.1 687,602 + +0.6 687,602 + +0.8 687,602 + +0.9 687,602 + -1.0 687,603 - -1.3 687,603 - -0.6 687,603 - -0.1 687,603 - -0.3 687,603 - -0.5 687,613 + +0.6 687,711 + +0.7 687,712 - +0.3 687,712 - -2.5 687,813 + ABIE40_RS03460 0.25 -0.0 687,813 + ABIE40_RS03460 0.25 -0.9 687,814 - ABIE40_RS03460 0.25 -0.7 687,814 - ABIE40_RS03460 0.25 -0.1 687,826 - ABIE40_RS03460 0.27 -0.5 687,826 - ABIE40_RS03460 0.27 -0.7 687,826 - ABIE40_RS03460 0.27 -2.5 688,018 + ABIE40_RS03460 0.59 -2.1 688,237 + +0.4 688,237 + -2.1 688,237 + -0.6 688,238 - -1.1 688,238 - -0.2 688,238 - +0.1 688,301 + +0.0 688,301 + +0.7 688,301 + -0.5 688,301 + +1.7 688,301 + +1.1 688,302 - +0.8 688,302 - +0.0 688,400 + -1.6 688,400 + -0.2 688,461 + +0.2 690,185 + ABIE40_RS03470 0.24 -0.2 690,185 + ABIE40_RS03470 0.24 -0.4 690,185 + ABIE40_RS03470 0.24 -0.9 690,185 + ABIE40_RS03470 0.24 -0.2 690,185 + ABIE40_RS03470 0.24 +1.1 690,186 - ABIE40_RS03470 0.25 +1.7 690,186 - ABIE40_RS03470 0.25 +2.1 690,186 - ABIE40_RS03470 0.25 +0.5 690,186 - ABIE40_RS03470 0.25 -0.2 690,186 - ABIE40_RS03470 0.25 -1.2 690,186 - ABIE40_RS03470 0.25 +0.6 690,186 - ABIE40_RS03470 0.25 -0.3 690,186 - ABIE40_RS03470 0.25 -0.6 690,186 - ABIE40_RS03470 0.25 +0.5 690,186 - ABIE40_RS03470 0.25 +0.8 690,186 - ABIE40_RS03470 0.25 +1.7 690,186 - ABIE40_RS03470 0.25 -1.2 690,198 - ABIE40_RS03470 0.27 +2.1 690,259 + ABIE40_RS03470 0.38 +0.6 690,259 + ABIE40_RS03470 0.38 -0.3 690,275 + ABIE40_RS03470 0.41 +0.6 690,275 + ABIE40_RS03470 0.41 -2.0 690,276 - ABIE40_RS03470 0.41 +0.1 690,276 - ABIE40_RS03470 0.41 +0.1 690,276 - ABIE40_RS03470 0.41 +0.2 690,276 - ABIE40_RS03470 0.41 +0.2 690,276 - ABIE40_RS03470 0.41 -0.9 690,419 + ABIE40_RS03470 0.67 +0.1 690,419 + ABIE40_RS03470 0.67 -0.2 690,419 + ABIE40_RS03470 0.67 -1.6 690,420 - ABIE40_RS03470 0.67 -0.9 690,420 - ABIE40_RS03470 0.67 +1.9 690,420 - ABIE40_RS03470 0.67 -2.5 690,420 - ABIE40_RS03470 0.67 +0.6 690,420 - ABIE40_RS03470 0.67 +1.0 690,599 + -2.0 690,599 + +0.2 690,599 + +0.5 690,599 + -2.1 690,705 + ABIE40_RS03475 0.11 -0.3 690,706 - ABIE40_RS03475 0.11 +0.1 690,706 - ABIE40_RS03475 0.11 +0.0 690,931 - ABIE40_RS03475 0.36 -0.1 690,999 + ABIE40_RS03475 0.43 +0.4 691,000 - ABIE40_RS03475 0.43 -3.0 691,000 - ABIE40_RS03475 0.43 +0.3 691,000 - ABIE40_RS03475 0.43 -0.3
Or see this region's nucleotide sequence