Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02875

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02860 and ABIE40_RS02865 are separated by 63 nucleotidesABIE40_RS02865 and ABIE40_RS02870 overlap by 4 nucleotidesABIE40_RS02870 and ABIE40_RS02875 are separated by 17 nucleotidesABIE40_RS02875 and ABIE40_RS02880 are separated by 4 nucleotidesABIE40_RS02880 and ABIE40_RS02885 overlap by 4 nucleotides ABIE40_RS02860: ABIE40_RS02860 - globin-coupled sensor protein, at 566,662 to 568,290 _RS02860 ABIE40_RS02865: ABIE40_RS02865 - STAS domain-containing protein, at 568,354 to 568,651 _RS02865 ABIE40_RS02870: ABIE40_RS02870 - chemotaxis response regulator CheY1, at 568,648 to 569,013 _RS02870 ABIE40_RS02875: ABIE40_RS02875 - chemotaxis protein CheA, at 569,031 to 571,328 _RS02875 ABIE40_RS02880: ABIE40_RS02880 - chemotaxis protein CheW, at 571,333 to 571,800 _RS02880 ABIE40_RS02885: ABIE40_RS02885 - protein-glutamate O-methyltransferase CheR, at 571,797 to 572,708 _RS02885 Position (kb) 569 570 571 572Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 568.095 kb on - strand, within ABIE40_RS02860at 568.095 kb on - strand, within ABIE40_RS02860at 568.095 kb on - strand, within ABIE40_RS02860at 568.285 kb on + strandat 568.286 kb on - strandat 568.286 kb on - strandat 568.286 kb on - strandat 568.288 kb on + strandat 568.288 kb on + strandat 568.288 kb on + strandat 568.289 kb on - strandat 568.289 kb on - strandat 568.293 kb on + strandat 568.294 kb on - strandat 568.302 kb on - strandat 568.302 kb on - strandat 568.302 kb on - strandat 568.383 kb on + strandat 568.384 kb on - strand, within ABIE40_RS02865at 568.615 kb on + strand, within ABIE40_RS02865at 568.615 kb on + strand, within ABIE40_RS02865at 568.616 kb on - strand, within ABIE40_RS02865at 568.617 kb on + strand, within ABIE40_RS02865at 568.617 kb on + strand, within ABIE40_RS02865at 568.617 kb on + strand, within ABIE40_RS02865at 568.617 kb on + strand, within ABIE40_RS02865at 568.617 kb on + strand, within ABIE40_RS02865at 568.617 kb on + strand, within ABIE40_RS02865at 568.618 kb on - strand, within ABIE40_RS02865at 568.618 kb on - strand, within ABIE40_RS02865at 568.618 kb on - strand, within ABIE40_RS02865at 568.618 kb on - strand, within ABIE40_RS02865at 568.985 kb on + strandat 568.985 kb on + strandat 568.985 kb on + strandat 568.985 kb on + strandat 568.985 kb on + strandat 568.986 kb on - strandat 569.030 kb on + strandat 569.030 kb on + strandat 569.030 kb on + strandat 569.031 kb on - strandat 569.037 kb on - strandat 569.037 kb on - strandat 569.115 kb on + strandat 569.227 kb on + strandat 569.227 kb on + strandat 569.227 kb on + strandat 569.227 kb on + strandat 569.227 kb on + strandat 569.228 kb on - strandat 569.228 kb on - strandat 569.228 kb on - strandat 569.228 kb on - strandat 569.228 kb on - strandat 569.273 kb on + strand, within ABIE40_RS02875at 569.273 kb on + strand, within ABIE40_RS02875at 569.273 kb on + strand, within ABIE40_RS02875at 569.274 kb on - strand, within ABIE40_RS02875at 569.274 kb on - strand, within ABIE40_RS02875at 569.274 kb on - strand, within ABIE40_RS02875at 569.274 kb on - strand, within ABIE40_RS02875at 569.631 kb on + strand, within ABIE40_RS02875at 569.632 kb on - strand, within ABIE40_RS02875at 569.632 kb on - strand, within ABIE40_RS02875at 569.697 kb on + strand, within ABIE40_RS02875at 569.697 kb on + strand, within ABIE40_RS02875at 569.698 kb on - strand, within ABIE40_RS02875at 569.751 kb on + strand, within ABIE40_RS02875at 569.751 kb on + strand, within ABIE40_RS02875at 569.751 kb on + strand, within ABIE40_RS02875at 569.752 kb on - strand, within ABIE40_RS02875at 569.752 kb on - strand, within ABIE40_RS02875at 570.146 kb on - strand, within ABIE40_RS02875at 570.239 kb on + strand, within ABIE40_RS02875at 570.239 kb on + strand, within ABIE40_RS02875at 570.357 kb on - strand, within ABIE40_RS02875at 570.357 kb on - strand, within ABIE40_RS02875at 570.470 kb on + strand, within ABIE40_RS02875at 570.470 kb on + strand, within ABIE40_RS02875at 570.470 kb on + strand, within ABIE40_RS02875at 570.470 kb on + strand, within ABIE40_RS02875at 570.470 kb on + strand, within ABIE40_RS02875at 570.470 kb on + strand, within ABIE40_RS02875at 570.470 kb on + strand, within ABIE40_RS02875at 570.470 kb on + strand, within ABIE40_RS02875at 570.471 kb on - strand, within ABIE40_RS02875at 570.471 kb on - strand, within ABIE40_RS02875at 570.810 kb on - strand, within ABIE40_RS02875at 571.010 kb on + strand, within ABIE40_RS02875at 571.188 kb on + strandat 571.188 kb on + strandat 571.188 kb on + strandat 571.188 kb on + strandat 571.188 kb on + strandat 571.189 kb on - strandat 571.189 kb on - strandat 571.189 kb on - strandat 571.190 kb on + strandat 571.190 kb on + strandat 571.190 kb on + strandat 571.190 kb on + strandat 571.190 kb on + strandat 571.191 kb on - strandat 571.191 kb on - strandat 571.326 kb on + strandat 571.326 kb on + strandat 571.327 kb on - strandat 571.327 kb on - strandat 571.416 kb on + strand, within ABIE40_RS02880at 571.417 kb on - strand, within ABIE40_RS02880at 571.417 kb on - strand, within ABIE40_RS02880at 571.480 kb on + strand, within ABIE40_RS02880at 571.480 kb on + strand, within ABIE40_RS02880at 571.480 kb on + strand, within ABIE40_RS02880at 571.480 kb on + strand, within ABIE40_RS02880at 571.480 kb on + strand, within ABIE40_RS02880at 571.481 kb on - strand, within ABIE40_RS02880at 571.481 kb on - strand, within ABIE40_RS02880at 571.481 kb on - strand, within ABIE40_RS02880at 571.481 kb on - strand, within ABIE40_RS02880at 571.481 kb on - strand, within ABIE40_RS02880at 571.481 kb on - strand, within ABIE40_RS02880at 571.481 kb on - strand, within ABIE40_RS02880at 571.481 kb on - strand, within ABIE40_RS02880at 571.639 kb on + strand, within ABIE40_RS02880at 571.642 kb on - strand, within ABIE40_RS02880at 571.665 kb on + strand, within ABIE40_RS02880at 571.666 kb on - strand, within ABIE40_RS02880at 571.666 kb on - strand, within ABIE40_RS02880at 571.666 kb on - strand, within ABIE40_RS02880at 571.863 kb on + strandat 571.908 kb on + strand, within ABIE40_RS02885at 571.908 kb on + strand, within ABIE40_RS02885at 571.908 kb on + strand, within ABIE40_RS02885at 571.908 kb on + strand, within ABIE40_RS02885at 571.909 kb on - strand, within ABIE40_RS02885at 571.909 kb on - strand, within ABIE40_RS02885at 571.909 kb on - strand, within ABIE40_RS02885at 571.956 kb on + strand, within ABIE40_RS02885at 571.956 kb on + strand, within ABIE40_RS02885at 572.114 kb on - strand, within ABIE40_RS02885at 572.217 kb on + strand, within ABIE40_RS02885at 572.218 kb on - strand, within ABIE40_RS02885at 572.265 kb on + strand, within ABIE40_RS02885

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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568,095 - ABIE40_RS02860 0.88 +0.0
568,095 - ABIE40_RS02860 0.88 +1.5
568,095 - ABIE40_RS02860 0.88 -0.4
568,285 + +0.6
568,286 - -0.5
568,286 - +0.6
568,286 - -0.9
568,288 + -0.2
568,288 + -0.3
568,288 + -0.8
568,289 - -0.2
568,289 - -1.0
568,293 + -3.9
568,294 - -0.6
568,302 - -1.3
568,302 - -0.7
568,302 - +1.2
568,383 + -0.6
568,384 - ABIE40_RS02865 0.10 -0.5
568,615 + ABIE40_RS02865 0.88 -0.2
568,615 + ABIE40_RS02865 0.88 -0.2
568,616 - ABIE40_RS02865 0.88 -0.1
568,617 + ABIE40_RS02865 0.88 +0.9
568,617 + ABIE40_RS02865 0.88 +0.5
568,617 + ABIE40_RS02865 0.88 +1.9
568,617 + ABIE40_RS02865 0.88 -0.1
568,617 + ABIE40_RS02865 0.88 +0.9
568,617 + ABIE40_RS02865 0.88 +0.9
568,618 - ABIE40_RS02865 0.89 -2.6
568,618 - ABIE40_RS02865 0.89 -0.9
568,618 - ABIE40_RS02865 0.89 -1.4
568,618 - ABIE40_RS02865 0.89 +0.7
568,985 + +0.0
568,985 + -0.6
568,985 + -2.3
568,985 + -0.1
568,985 + -0.2
568,986 - -0.2
569,030 + +0.7
569,030 + +0.2
569,030 + -1.5
569,031 - -2.1
569,037 - -2.5
569,037 - -1.7
569,115 + -0.4
569,227 + +0.5
569,227 + +0.8
569,227 + -1.7
569,227 + -0.2
569,227 + +0.7
569,228 - -1.2
569,228 - -0.5
569,228 - -0.8
569,228 - +0.4
569,228 - -3.6
569,273 + ABIE40_RS02875 0.11 -0.5
569,273 + ABIE40_RS02875 0.11 -1.9
569,273 + ABIE40_RS02875 0.11 -0.7
569,274 - ABIE40_RS02875 0.11 -0.2
569,274 - ABIE40_RS02875 0.11 -0.5
569,274 - ABIE40_RS02875 0.11 +0.4
569,274 - ABIE40_RS02875 0.11 -0.7
569,631 + ABIE40_RS02875 0.26 -0.7
569,632 - ABIE40_RS02875 0.26 -0.9
569,632 - ABIE40_RS02875 0.26 -1.2
569,697 + ABIE40_RS02875 0.29 -0.3
569,697 + ABIE40_RS02875 0.29 +0.1
569,698 - ABIE40_RS02875 0.29 +0.1
569,751 + ABIE40_RS02875 0.31 -2.1
569,751 + ABIE40_RS02875 0.31 -0.7
569,751 + ABIE40_RS02875 0.31 +0.4
569,752 - ABIE40_RS02875 0.31 -1.4
569,752 - ABIE40_RS02875 0.31 -0.4
570,146 - ABIE40_RS02875 0.49 -0.3
570,239 + ABIE40_RS02875 0.53 +0.4
570,239 + ABIE40_RS02875 0.53 -0.7
570,357 - ABIE40_RS02875 0.58 -1.1
570,357 - ABIE40_RS02875 0.58 -1.0
570,470 + ABIE40_RS02875 0.63 +0.2
570,470 + ABIE40_RS02875 0.63 -0.8
570,470 + ABIE40_RS02875 0.63 -0.5
570,470 + ABIE40_RS02875 0.63 +0.9
570,470 + ABIE40_RS02875 0.63 -0.1
570,470 + ABIE40_RS02875 0.63 +1.2
570,470 + ABIE40_RS02875 0.63 -0.2
570,470 + ABIE40_RS02875 0.63 -0.2
570,471 - ABIE40_RS02875 0.63 -0.1
570,471 - ABIE40_RS02875 0.63 -0.5
570,810 - ABIE40_RS02875 0.77 -0.0
571,010 + ABIE40_RS02875 0.86 +0.3
571,188 + +0.4
571,188 + -0.2
571,188 + -2.3
571,188 + +0.3
571,188 + +0.1
571,189 - -1.4
571,189 - -1.1
571,189 - -0.9
571,190 + -0.5
571,190 + -1.5
571,190 + +0.7
571,190 + -1.2
571,190 + +0.0
571,191 - -0.6
571,191 - -1.3
571,326 + -0.3
571,326 + -0.2
571,327 - +0.2
571,327 - +0.9
571,416 + ABIE40_RS02880 0.18 -0.7
571,417 - ABIE40_RS02880 0.18 -0.8
571,417 - ABIE40_RS02880 0.18 +0.2
571,480 + ABIE40_RS02880 0.31 -0.2
571,480 + ABIE40_RS02880 0.31 -1.3
571,480 + ABIE40_RS02880 0.31 -0.0
571,480 + ABIE40_RS02880 0.31 +0.1
571,480 + ABIE40_RS02880 0.31 +0.8
571,481 - ABIE40_RS02880 0.32 -0.5
571,481 - ABIE40_RS02880 0.32 -2.7
571,481 - ABIE40_RS02880 0.32 +0.2
571,481 - ABIE40_RS02880 0.32 +0.6
571,481 - ABIE40_RS02880 0.32 -0.9
571,481 - ABIE40_RS02880 0.32 -0.1
571,481 - ABIE40_RS02880 0.32 -0.1
571,481 - ABIE40_RS02880 0.32 -1.4
571,639 + ABIE40_RS02880 0.65 +1.2
571,642 - ABIE40_RS02880 0.66 -0.2
571,665 + ABIE40_RS02880 0.71 +1.0
571,666 - ABIE40_RS02880 0.71 +1.5
571,666 - ABIE40_RS02880 0.71 -0.5
571,666 - ABIE40_RS02880 0.71 -1.6
571,863 + +0.5
571,908 + ABIE40_RS02885 0.12 -0.4
571,908 + ABIE40_RS02885 0.12 +0.2
571,908 + ABIE40_RS02885 0.12 -1.4
571,908 + ABIE40_RS02885 0.12 +0.0
571,909 - ABIE40_RS02885 0.12 -1.8
571,909 - ABIE40_RS02885 0.12 +1.2
571,909 - ABIE40_RS02885 0.12 +0.5
571,956 + ABIE40_RS02885 0.17 -0.5
571,956 + ABIE40_RS02885 0.17 +0.9
572,114 - ABIE40_RS02885 0.35 +0.6
572,217 + ABIE40_RS02885 0.46 -0.6
572,218 - ABIE40_RS02885 0.46 -3.0
572,265 + ABIE40_RS02885 0.51 +0.2

Or see this region's nucleotide sequence