Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02100

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02090 and ABIE40_RS02095 overlap by 4 nucleotidesABIE40_RS02095 and ABIE40_RS02100 are separated by 207 nucleotidesABIE40_RS02100 and ABIE40_RS02105 are separated by 80 nucleotides ABIE40_RS02090: ABIE40_RS02090 - ATP-binding cassette domain-containing protein, at 410,086 to 410,868 _RS02090 ABIE40_RS02095: ABIE40_RS02095 - nucleoside triphosphate hydrolase, at 410,865 to 411,494 _RS02095 ABIE40_RS02100: ABIE40_RS02100 - MFS transporter, at 411,702 to 412,844 _RS02100 ABIE40_RS02105: ABIE40_RS02105 - dihydroorotase, at 412,925 to 413,965 _RS02105 Position (kb) 411 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 410.797 kb on + strandat 410.797 kb on + strandat 410.798 kb on - strandat 410.798 kb on - strandat 410.798 kb on - strandat 410.879 kb on - strandat 410.981 kb on + strand, within ABIE40_RS02095at 411.054 kb on - strand, within ABIE40_RS02095at 411.054 kb on - strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.261 kb on + strand, within ABIE40_RS02095at 411.262 kb on - strand, within ABIE40_RS02095at 411.262 kb on - strand, within ABIE40_RS02095at 411.262 kb on - strand, within ABIE40_RS02095at 411.262 kb on - strand, within ABIE40_RS02095at 411.262 kb on - strand, within ABIE40_RS02095at 411.281 kb on + strand, within ABIE40_RS02095at 411.281 kb on + strand, within ABIE40_RS02095at 411.282 kb on - strand, within ABIE40_RS02095at 411.314 kb on + strand, within ABIE40_RS02095at 411.315 kb on - strand, within ABIE40_RS02095at 411.315 kb on - strand, within ABIE40_RS02095at 411.315 kb on - strand, within ABIE40_RS02095at 411.379 kb on - strand, within ABIE40_RS02095at 411.414 kb on + strand, within ABIE40_RS02095at 411.414 kb on + strand, within ABIE40_RS02095at 411.414 kb on + strand, within ABIE40_RS02095at 411.414 kb on + strand, within ABIE40_RS02095at 411.415 kb on - strand, within ABIE40_RS02095at 411.473 kb on + strandat 411.473 kb on + strandat 411.473 kb on + strandat 411.474 kb on - strandat 411.474 kb on - strandat 411.474 kb on - strandat 411.492 kb on + strandat 411.502 kb on + strandat 411.503 kb on - strandat 411.503 kb on - strandat 411.503 kb on - strandat 411.648 kb on + strandat 411.648 kb on + strandat 411.648 kb on + strandat 411.648 kb on + strandat 411.648 kb on + strandat 411.648 kb on + strandat 411.649 kb on - strandat 411.649 kb on - strandat 411.649 kb on - strandat 411.649 kb on - strandat 411.649 kb on - strandat 411.688 kb on - strandat 411.743 kb on - strandat 411.840 kb on + strand, within ABIE40_RS02100at 411.866 kb on - strand, within ABIE40_RS02100at 411.909 kb on - strand, within ABIE40_RS02100at 412.080 kb on + strand, within ABIE40_RS02100at 412.208 kb on - strand, within ABIE40_RS02100at 412.469 kb on + strand, within ABIE40_RS02100at 412.469 kb on + strand, within ABIE40_RS02100at 412.470 kb on - strand, within ABIE40_RS02100at 412.519 kb on + strand, within ABIE40_RS02100at 412.519 kb on + strand, within ABIE40_RS02100at 412.569 kb on + strand, within ABIE40_RS02100at 412.569 kb on + strand, within ABIE40_RS02100at 412.569 kb on + strand, within ABIE40_RS02100at 412.569 kb on + strand, within ABIE40_RS02100at 412.569 kb on + strand, within ABIE40_RS02100at 412.569 kb on + strand, within ABIE40_RS02100at 412.570 kb on - strand, within ABIE40_RS02100at 412.570 kb on - strand, within ABIE40_RS02100at 412.570 kb on - strand, within ABIE40_RS02100at 412.571 kb on + strand, within ABIE40_RS02100at 412.572 kb on - strand, within ABIE40_RS02100at 412.572 kb on - strand, within ABIE40_RS02100at 412.572 kb on - strand, within ABIE40_RS02100at 412.659 kb on + strand, within ABIE40_RS02100at 412.770 kb on + strandat 412.771 kb on - strandat 412.779 kb on + strandat 412.779 kb on + strandat 412.779 kb on + strandat 412.779 kb on + strandat 412.779 kb on + strandat 412.779 kb on + strandat 412.779 kb on + strandat 412.779 kb on + strandat 412.779 kb on + strandat 412.779 kb on + strandat 412.779 kb on + strandat 412.780 kb on - strandat 412.780 kb on - strandat 412.780 kb on - strandat 412.780 kb on - strandat 412.780 kb on - strandat 412.780 kb on - strandat 412.780 kb on - strandat 412.780 kb on - strandat 412.780 kb on - strandat 412.780 kb on - strandat 412.858 kb on + strandat 412.889 kb on + strandat 412.889 kb on + strandat 413.721 kb on - strand, within ABIE40_RS02105

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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410,797 + -1.3
410,797 + -2.6
410,798 - +0.0
410,798 - +1.1
410,798 - -0.5
410,879 - -0.3
410,981 + ABIE40_RS02095 0.18 -1.1
411,054 - ABIE40_RS02095 0.30 -0.2
411,054 - ABIE40_RS02095 0.30 +0.3
411,261 + ABIE40_RS02095 0.63 +0.4
411,261 + ABIE40_RS02095 0.63 +3.9
411,261 + ABIE40_RS02095 0.63 -0.7
411,261 + ABIE40_RS02095 0.63 -2.9
411,261 + ABIE40_RS02095 0.63 -0.3
411,261 + ABIE40_RS02095 0.63 +0.8
411,262 - ABIE40_RS02095 0.63 +0.1
411,262 - ABIE40_RS02095 0.63 +0.1
411,262 - ABIE40_RS02095 0.63 +1.0
411,262 - ABIE40_RS02095 0.63 +1.5
411,262 - ABIE40_RS02095 0.63 +0.5
411,281 + ABIE40_RS02095 0.66 +0.0
411,281 + ABIE40_RS02095 0.66 +0.8
411,282 - ABIE40_RS02095 0.66 -0.1
411,314 + ABIE40_RS02095 0.71 +0.5
411,315 - ABIE40_RS02095 0.71 -0.0
411,315 - ABIE40_RS02095 0.71 +0.9
411,315 - ABIE40_RS02095 0.71 +0.4
411,379 - ABIE40_RS02095 0.82 -0.1
411,414 + ABIE40_RS02095 0.87 +1.1
411,414 + ABIE40_RS02095 0.87 +0.8
411,414 + ABIE40_RS02095 0.87 +2.7
411,414 + ABIE40_RS02095 0.87 -0.3
411,415 - ABIE40_RS02095 0.87 -0.1
411,473 + +1.2
411,473 + -1.4
411,473 + -1.5
411,474 - +1.9
411,474 - -0.2
411,474 - -0.5
411,492 + -0.4
411,502 + -0.0
411,503 - -0.8
411,503 - +0.5
411,503 - -0.3
411,648 + -1.8
411,648 + +1.1
411,648 + +0.3
411,648 + +1.5
411,648 + -1.1
411,648 + -0.4
411,649 - -1.3
411,649 - +0.5
411,649 - -1.5
411,649 - -1.2
411,649 - -0.8
411,688 - -0.1
411,743 - -0.5
411,840 + ABIE40_RS02100 0.12 -1.2
411,866 - ABIE40_RS02100 0.14 -0.4
411,909 - ABIE40_RS02100 0.18 -0.3
412,080 + ABIE40_RS02100 0.33 -0.3
412,208 - ABIE40_RS02100 0.44 +0.3
412,469 + ABIE40_RS02100 0.67 +0.6
412,469 + ABIE40_RS02100 0.67 -0.8
412,470 - ABIE40_RS02100 0.67 +3.1
412,519 + ABIE40_RS02100 0.71 +0.5
412,519 + ABIE40_RS02100 0.71 -0.3
412,569 + ABIE40_RS02100 0.76 +1.5
412,569 + ABIE40_RS02100 0.76 +0.1
412,569 + ABIE40_RS02100 0.76 -2.0
412,569 + ABIE40_RS02100 0.76 -0.5
412,569 + ABIE40_RS02100 0.76 +0.5
412,569 + ABIE40_RS02100 0.76 +0.7
412,570 - ABIE40_RS02100 0.76 +0.1
412,570 - ABIE40_RS02100 0.76 -0.1
412,570 - ABIE40_RS02100 0.76 -0.2
412,571 + ABIE40_RS02100 0.76 +0.5
412,572 - ABIE40_RS02100 0.76 +0.1
412,572 - ABIE40_RS02100 0.76 +2.9
412,572 - ABIE40_RS02100 0.76 +0.1
412,659 + ABIE40_RS02100 0.84 -0.8
412,770 + +0.6
412,771 - -0.6
412,779 + -0.7
412,779 + -0.4
412,779 + +0.6
412,779 + -0.2
412,779 + -0.0
412,779 + -1.0
412,779 + +2.5
412,779 + +0.2
412,779 + +0.3
412,779 + +0.3
412,779 + +0.7
412,780 - -0.1
412,780 - +0.3
412,780 - +0.8
412,780 - -0.1
412,780 - +0.8
412,780 - -0.2
412,780 - -0.2
412,780 - -0.8
412,780 - +0.7
412,780 - -0.3
412,858 + -0.1
412,889 + -0.7
412,889 + -0.6
413,721 - ABIE40_RS02105 0.76 -0.8

Or see this region's nucleotide sequence