Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27980

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS27975 and ABID97_RS27980 overlap by 4 nucleotidesABID97_RS27980 and ABID97_RS27985 are separated by 22 nucleotides ABID97_RS27975: ABID97_RS27975 - phosphotransferase, at 513,709 to 514,713 _RS27975 ABID97_RS27980: ABID97_RS27980 - alcohol dehydrogenase catalytic domain-containing protein, at 514,710 to 515,837 _RS27980 ABID97_RS27985: ABID97_RS27985 - amino acid ABC transporter substrate-binding protein, at 515,860 to 517,083 _RS27985 Position (kb) 514 515 516Strain fitness (log2 ratio) -1 0 1at 513.827 kb on + strand, within ABID97_RS27975at 514.744 kb on + strandat 515.333 kb on - strand, within ABID97_RS27980at 515.426 kb on - strand, within ABID97_RS27980at 515.560 kb on + strand, within ABID97_RS27980at 516.791 kb on + strand, within ABID97_RS27985

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
513,827 + ABID97_RS27975 0.12 +0.1
514,744 + -0.4
515,333 - ABID97_RS27980 0.55 -1.0
515,426 - ABID97_RS27980 0.63 -0.6
515,560 + ABID97_RS27980 0.75 -0.7
516,791 + ABID97_RS27985 0.76 -0.1

Or see this region's nucleotide sequence