Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24655 and ABID97_RS24660 overlap by 4 nucleotides ABID97_RS24660 and ABID97_RS24665 overlap by 1 nucleotides ABID97_RS24665 and ABID97_RS24670 overlap by 4 nucleotides ABID97_RS24670 and ABID97_RS24675 are separated by 11 nucleotides
ABID97_RS24655: ABID97_RS24655 - dihydroorotase, at 5,107,693 to 5,108,979
_RS24655
ABID97_RS24660: ABID97_RS24660 - aspartate carbamoyltransferase catalytic subunit, at 5,108,976 to 5,109,938
_RS24660
ABID97_RS24665: ABID97_RS24665 - bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR, at 5,109,938 to 5,110,435
_RS24665
ABID97_RS24670: ABID97_RS24670 - Holliday junction resolvase RuvX, at 5,110,432 to 5,110,878
_RS24670
ABID97_RS24675: ABID97_RS24675 - YqgE/AlgH family protein, at 5,110,890 to 5,111,489
_RS24675
Position (kb) 5108
5109
5110 Strain fitness (log2 ratio) -1
0
1 at 5108.453 kb on + strand, within ABID97_RS24655 at 5108.453 kb on + strand, within ABID97_RS24655 at 5108.454 kb on - strand, within ABID97_RS24655 at 5108.471 kb on + strand, within ABID97_RS24655 at 5108.471 kb on + strand, within ABID97_RS24655 at 5108.471 kb on + strand, within ABID97_RS24655 at 5109.169 kb on + strand, within ABID97_RS24660 at 5109.169 kb on + strand, within ABID97_RS24660 at 5109.169 kb on + strand, within ABID97_RS24660 at 5109.170 kb on - strand, within ABID97_RS24660 at 5109.469 kb on + strand, within ABID97_RS24660 at 5109.469 kb on + strand, within ABID97_RS24660 at 5109.469 kb on + strand, within ABID97_RS24660 at 5109.469 kb on + strand, within ABID97_RS24660 at 5109.469 kb on + strand, within ABID97_RS24660 at 5109.470 kb on - strand, within ABID97_RS24660 at 5109.470 kb on - strand, within ABID97_RS24660 at 5109.470 kb on - strand, within ABID97_RS24660 at 5109.470 kb on - strand, within ABID97_RS24660 at 5109.470 kb on - strand, within ABID97_RS24660 at 5109.562 kb on + strand, within ABID97_RS24660 at 5109.681 kb on + strand, within ABID97_RS24660 at 5109.931 kb on + strand at 5109.931 kb on + strand at 5109.931 kb on + strand at 5109.932 kb on - strand at 5110.156 kb on - strand, within ABID97_RS24665 at 5110.156 kb on - strand, within ABID97_RS24665 at 5110.404 kb on + strand at 5110.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 5,108,453 + ABID97_RS24655 0.59 -0.1 5,108,453 + ABID97_RS24655 0.59 +0.4 5,108,454 - ABID97_RS24655 0.59 -0.0 5,108,471 + ABID97_RS24655 0.60 -1.1 5,108,471 + ABID97_RS24655 0.60 -0.6 5,108,471 + ABID97_RS24655 0.60 +0.2 5,109,169 + ABID97_RS24660 0.20 +0.3 5,109,169 + ABID97_RS24660 0.20 +0.3 5,109,169 + ABID97_RS24660 0.20 -0.1 5,109,170 - ABID97_RS24660 0.20 -0.1 5,109,469 + ABID97_RS24660 0.51 -0.3 5,109,469 + ABID97_RS24660 0.51 +0.1 5,109,469 + ABID97_RS24660 0.51 -0.3 5,109,469 + ABID97_RS24660 0.51 -0.4 5,109,469 + ABID97_RS24660 0.51 +0.2 5,109,470 - ABID97_RS24660 0.51 -0.4 5,109,470 - ABID97_RS24660 0.51 -0.3 5,109,470 - ABID97_RS24660 0.51 -0.1 5,109,470 - ABID97_RS24660 0.51 -0.1 5,109,470 - ABID97_RS24660 0.51 -0.0 5,109,562 + ABID97_RS24660 0.61 -0.0 5,109,681 + ABID97_RS24660 0.73 -0.1 5,109,931 + -0.0 5,109,931 + +0.2 5,109,931 + -0.2 5,109,932 - -1.7 5,110,156 - ABID97_RS24665 0.44 -0.4 5,110,156 - ABID97_RS24665 0.44 +0.1 5,110,404 + -0.0 5,110,404 + +0.2
Or see this region's nucleotide sequence