Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22340 and ABID97_RS22345 are separated by 104 nucleotides ABID97_RS22345 and ABID97_RS22350 overlap by 1 nucleotides ABID97_RS22350 and ABID97_RS22355 are separated by 8 nucleotides
ABID97_RS22340: ABID97_RS22340 - NADP-dependent malic enzyme, at 4,629,396 to 4,631,699
_RS22340
ABID97_RS22345: ABID97_RS22345 - ABC transporter substrate-binding protein, at 4,631,804 to 4,632,838
_RS22345
ABID97_RS22350: ABID97_RS22350 - ABC transporter ATP-binding protein, at 4,632,838 to 4,633,698
_RS22350
ABID97_RS22355: ABID97_RS22355 - ABC transporter permease, at 4,633,707 to 4,634,477
_RS22355
Position (kb) 4631
4632
4633 Strain fitness (log2 ratio) -1
0
1 at 4630.948 kb on - strand, within ABID97_RS22340 at 4630.948 kb on - strand, within ABID97_RS22340 at 4631.329 kb on - strand, within ABID97_RS22340 at 4631.329 kb on - strand, within ABID97_RS22340 at 4631.329 kb on - strand, within ABID97_RS22340 at 4631.538 kb on + strand at 4631.538 kb on + strand at 4631.697 kb on + strand at 4631.963 kb on + strand, within ABID97_RS22345 at 4631.964 kb on - strand, within ABID97_RS22345 at 4632.141 kb on - strand, within ABID97_RS22345 at 4632.232 kb on - strand, within ABID97_RS22345 at 4632.434 kb on + strand, within ABID97_RS22345 at 4632.443 kb on + strand, within ABID97_RS22345 at 4632.458 kb on + strand, within ABID97_RS22345 at 4632.780 kb on + strand at 4633.222 kb on + strand, within ABID97_RS22350 at 4633.223 kb on - strand, within ABID97_RS22350 at 4633.507 kb on + strand, within ABID97_RS22350 at 4633.588 kb on + strand, within ABID97_RS22350 at 4633.589 kb on - strand, within ABID97_RS22350
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 4,630,948 - ABID97_RS22340 0.67 +0.0 4,630,948 - ABID97_RS22340 0.67 -1.1 4,631,329 - ABID97_RS22340 0.84 -0.9 4,631,329 - ABID97_RS22340 0.84 -0.6 4,631,329 - ABID97_RS22340 0.84 -0.3 4,631,538 + -0.7 4,631,538 + -0.1 4,631,697 + -0.3 4,631,963 + ABID97_RS22345 0.15 +0.4 4,631,964 - ABID97_RS22345 0.15 +0.1 4,632,141 - ABID97_RS22345 0.33 -1.1 4,632,232 - ABID97_RS22345 0.41 -0.3 4,632,434 + ABID97_RS22345 0.61 +0.3 4,632,443 + ABID97_RS22345 0.62 -0.7 4,632,458 + ABID97_RS22345 0.63 -0.4 4,632,780 + -0.7 4,633,222 + ABID97_RS22350 0.45 -0.3 4,633,223 - ABID97_RS22350 0.45 +0.4 4,633,507 + ABID97_RS22350 0.78 -0.1 4,633,588 + ABID97_RS22350 0.87 -1.0 4,633,589 - ABID97_RS22350 0.87 -0.1
Or see this region's nucleotide sequence