Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15575 and ABID97_RS15580 are separated by 1 nucleotides ABID97_RS15580 and ABID97_RS15585 are separated by 88 nucleotides ABID97_RS15585 and ABID97_RS15590 overlap by 4 nucleotides ABID97_RS15590 and ABID97_RS15595 are separated by 9 nucleotides
ABID97_RS15575: ABID97_RS15575 - sulfate ABC transporter permease subunit CysT, at 3,219,227 to 3,220,114
_RS15575
ABID97_RS15580: ABID97_RS15580 - sulfate ABC transporter permease subunit CysW, at 3,220,116 to 3,221,009
_RS15580
ABID97_RS15585: ABID97_RS15585 - sulfate ABC transporter ATP-binding protein, at 3,221,098 to 3,222,195
_RS15585
ABID97_RS15590: ABID97_RS15590 - disulfide bond formation protein B, at 3,222,192 to 3,222,698
_RS15590
ABID97_RS15595: ABID97_RS15595 - mobilization protein, at 3,222,708 to 3,223,400
_RS15595
Position (kb)
3221
3222
3223 Strain fitness (log2 ratio)
-2
-1
0
1 at 3220.485 kb on + strand, within ABID97_RS15580 at 3220.486 kb on - strand, within ABID97_RS15580 at 3220.860 kb on + strand, within ABID97_RS15580 at 3220.860 kb on + strand, within ABID97_RS15580 at 3221.344 kb on + strand, within ABID97_RS15585 at 3221.345 kb on - strand, within ABID97_RS15585 at 3221.920 kb on + strand, within ABID97_RS15585 at 3221.920 kb on + strand, within ABID97_RS15585 at 3221.921 kb on - strand, within ABID97_RS15585 at 3221.921 kb on - strand, within ABID97_RS15585 at 3221.954 kb on - strand, within ABID97_RS15585 at 3222.170 kb on + strand at 3222.276 kb on + strand, within ABID97_RS15590 at 3222.442 kb on - strand, within ABID97_RS15590 at 3222.709 kb on + strand at 3222.979 kb on + strand, within ABID97_RS15595 at 3222.979 kb on + strand, within ABID97_RS15595 at 3222.979 kb on + strand, within ABID97_RS15595 at 3222.979 kb on + strand, within ABID97_RS15595 at 3222.980 kb on - strand, within ABID97_RS15595 at 3222.980 kb on - strand, within ABID97_RS15595 at 3222.980 kb on - strand, within ABID97_RS15595
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 3,220,485 + ABID97_RS15580 0.41 -0.7 3,220,486 - ABID97_RS15580 0.41 -1.3 3,220,860 + ABID97_RS15580 0.83 -1.1 3,220,860 + ABID97_RS15580 0.83 -1.7 3,221,344 + ABID97_RS15585 0.22 -1.6 3,221,345 - ABID97_RS15585 0.22 -1.3 3,221,920 + ABID97_RS15585 0.75 -1.1 3,221,920 + ABID97_RS15585 0.75 -1.8 3,221,921 - ABID97_RS15585 0.75 -0.8 3,221,921 - ABID97_RS15585 0.75 -1.2 3,221,954 - ABID97_RS15585 0.78 -1.4 3,222,170 + -0.8 3,222,276 + ABID97_RS15590 0.17 +0.8 3,222,442 - ABID97_RS15590 0.49 -0.1 3,222,709 + -0.4 3,222,979 + ABID97_RS15595 0.39 +0.2 3,222,979 + ABID97_RS15595 0.39 -0.4 3,222,979 + ABID97_RS15595 0.39 +0.0 3,222,979 + ABID97_RS15595 0.39 -0.2 3,222,980 - ABID97_RS15595 0.39 -0.1 3,222,980 - ABID97_RS15595 0.39 -0.3 3,222,980 - ABID97_RS15595 0.39 +0.1
Or see this region's nucleotide sequence