Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15585

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS15575 and ABID97_RS15580 are separated by 1 nucleotidesABID97_RS15580 and ABID97_RS15585 are separated by 88 nucleotidesABID97_RS15585 and ABID97_RS15590 overlap by 4 nucleotidesABID97_RS15590 and ABID97_RS15595 are separated by 9 nucleotides ABID97_RS15575: ABID97_RS15575 - sulfate ABC transporter permease subunit CysT, at 3,219,227 to 3,220,114 _RS15575 ABID97_RS15580: ABID97_RS15580 - sulfate ABC transporter permease subunit CysW, at 3,220,116 to 3,221,009 _RS15580 ABID97_RS15585: ABID97_RS15585 - sulfate ABC transporter ATP-binding protein, at 3,221,098 to 3,222,195 _RS15585 ABID97_RS15590: ABID97_RS15590 - disulfide bond formation protein B, at 3,222,192 to 3,222,698 _RS15590 ABID97_RS15595: ABID97_RS15595 - mobilization protein, at 3,222,708 to 3,223,400 _RS15595 Position (kb) 3221 3222 3223Strain fitness (log2 ratio) -2 -1 0 1at 3220.485 kb on + strand, within ABID97_RS15580at 3220.486 kb on - strand, within ABID97_RS15580at 3220.860 kb on + strand, within ABID97_RS15580at 3220.860 kb on + strand, within ABID97_RS15580at 3221.344 kb on + strand, within ABID97_RS15585at 3221.345 kb on - strand, within ABID97_RS15585at 3221.920 kb on + strand, within ABID97_RS15585at 3221.920 kb on + strand, within ABID97_RS15585at 3221.921 kb on - strand, within ABID97_RS15585at 3221.921 kb on - strand, within ABID97_RS15585at 3221.954 kb on - strand, within ABID97_RS15585at 3222.170 kb on + strandat 3222.276 kb on + strand, within ABID97_RS15590at 3222.442 kb on - strand, within ABID97_RS15590at 3222.709 kb on + strandat 3222.979 kb on + strand, within ABID97_RS15595at 3222.979 kb on + strand, within ABID97_RS15595at 3222.979 kb on + strand, within ABID97_RS15595at 3222.979 kb on + strand, within ABID97_RS15595at 3222.980 kb on - strand, within ABID97_RS15595at 3222.980 kb on - strand, within ABID97_RS15595at 3222.980 kb on - strand, within ABID97_RS15595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
3,220,485 + ABID97_RS15580 0.41 -0.7
3,220,486 - ABID97_RS15580 0.41 -1.3
3,220,860 + ABID97_RS15580 0.83 -1.1
3,220,860 + ABID97_RS15580 0.83 -1.7
3,221,344 + ABID97_RS15585 0.22 -1.6
3,221,345 - ABID97_RS15585 0.22 -1.3
3,221,920 + ABID97_RS15585 0.75 -1.1
3,221,920 + ABID97_RS15585 0.75 -1.8
3,221,921 - ABID97_RS15585 0.75 -0.8
3,221,921 - ABID97_RS15585 0.75 -1.2
3,221,954 - ABID97_RS15585 0.78 -1.4
3,222,170 + -0.8
3,222,276 + ABID97_RS15590 0.17 +0.8
3,222,442 - ABID97_RS15590 0.49 -0.1
3,222,709 + -0.4
3,222,979 + ABID97_RS15595 0.39 +0.2
3,222,979 + ABID97_RS15595 0.39 -0.4
3,222,979 + ABID97_RS15595 0.39 +0.0
3,222,979 + ABID97_RS15595 0.39 -0.2
3,222,980 - ABID97_RS15595 0.39 -0.1
3,222,980 - ABID97_RS15595 0.39 -0.3
3,222,980 - ABID97_RS15595 0.39 +0.1

Or see this region's nucleotide sequence