Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13255

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13245 and ABID97_RS13250 are separated by 40 nucleotidesABID97_RS13250 and ABID97_RS13255 overlap by 4 nucleotidesABID97_RS13255 and ABID97_RS13260 overlap by 4 nucleotides ABID97_RS13245: ABID97_RS13245 - XRE family transcriptional regulator, at 2,760,091 to 2,760,621 _RS13245 ABID97_RS13250: ABID97_RS13250 - 3-oxoacid CoA-transferase subunit B, at 2,760,662 to 2,761,351 _RS13250 ABID97_RS13255: ABID97_RS13255 - 3-oxoacid CoA-transferase subunit A, at 2,761,348 to 2,762,010 _RS13255 ABID97_RS13260: ABID97_RS13260 - acyl-CoA dehydrogenase family protein, at 2,762,007 to 2,763,209 _RS13260 Position (kb) 2761 2762 2763Strain fitness (log2 ratio) -1 0 1at 2761.245 kb on + strand, within ABID97_RS13250at 2761.508 kb on + strand, within ABID97_RS13255at 2761.640 kb on - strand, within ABID97_RS13255at 2762.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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2,761,245 + ABID97_RS13250 0.84 -0.2
2,761,508 + ABID97_RS13255 0.24 +0.8
2,761,640 - ABID97_RS13255 0.44 +0.1
2,762,045 - -0.2

Or see this region's nucleotide sequence