Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10955 and ABID97_RS10960 are separated by 12 nucleotides ABID97_RS10960 and ABID97_RS10965 overlap by 4 nucleotides ABID97_RS10965 and ABID97_RS10970 are separated by 139 nucleotides ABID97_RS10970 and ABID97_RS10975 are separated by 43 nucleotides
ABID97_RS10955: ABID97_RS10955 - branched-chain amino acid ABC transporter permease, at 2,269,752 to 2,270,790
_RS10955
ABID97_RS10960: ABID97_RS10960 - branched-chain amino acid ABC transporter permease, at 2,270,803 to 2,271,684
_RS10960
ABID97_RS10965: ABID97_RS10965 - ABC transporter ATP-binding protein, at 2,271,681 to 2,272,544
_RS10965
ABID97_RS10970: ABID97_RS10970 - TetR/AcrR family transcriptional regulator, at 2,272,684 to 2,273,367
_RS10970
ABID97_RS10975: ABID97_RS10975 - acetyl-CoA C-acyltransferase family protein, at 2,273,411 to 2,274,595
_RS10975
Position (kb)
2271
2272
2273 Strain fitness (log2 ratio)
-1
0
1 at 2270.763 kb on - strand at 2270.783 kb on - strand at 2270.894 kb on + strand, within ABID97_RS10960 at 2270.894 kb on + strand, within ABID97_RS10960 at 2270.895 kb on - strand, within ABID97_RS10960 at 2270.895 kb on - strand, within ABID97_RS10960 at 2270.895 kb on - strand, within ABID97_RS10960 at 2271.590 kb on + strand, within ABID97_RS10960 at 2271.591 kb on - strand, within ABID97_RS10960 at 2272.345 kb on + strand, within ABID97_RS10965 at 2272.346 kb on - strand, within ABID97_RS10965 at 2272.876 kb on + strand, within ABID97_RS10970 at 2272.879 kb on + strand, within ABID97_RS10970 at 2272.880 kb on - strand, within ABID97_RS10970 at 2272.880 kb on - strand, within ABID97_RS10970 at 2272.883 kb on - strand, within ABID97_RS10970 at 2273.014 kb on + strand, within ABID97_RS10970 at 2273.015 kb on - strand, within ABID97_RS10970 at 2273.015 kb on - strand, within ABID97_RS10970
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 2,270,763 - +0.2 2,270,783 - -0.2 2,270,894 + ABID97_RS10960 0.10 +0.5 2,270,894 + ABID97_RS10960 0.10 -0.6 2,270,895 - ABID97_RS10960 0.10 -0.7 2,270,895 - ABID97_RS10960 0.10 -0.1 2,270,895 - ABID97_RS10960 0.10 +0.7 2,271,590 + ABID97_RS10960 0.89 -0.2 2,271,591 - ABID97_RS10960 0.89 +0.3 2,272,345 + ABID97_RS10965 0.77 +0.1 2,272,346 - ABID97_RS10965 0.77 +1.1 2,272,876 + ABID97_RS10970 0.28 -0.0 2,272,879 + ABID97_RS10970 0.29 +0.1 2,272,880 - ABID97_RS10970 0.29 -0.1 2,272,880 - ABID97_RS10970 0.29 +0.5 2,272,883 - ABID97_RS10970 0.29 +0.2 2,273,014 + ABID97_RS10970 0.48 +0.0 2,273,015 - ABID97_RS10970 0.48 -0.3 2,273,015 - ABID97_RS10970 0.48 -0.2
Or see this region's nucleotide sequence