Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04735 and ABID97_RS04740 are separated by 65 nucleotides ABID97_RS04740 and ABID97_RS04745 are separated by 6 nucleotides
ABID97_RS04735: ABID97_RS04735 - LysR family transcriptional regulator, at 986,759 to 987,739
_RS04735
ABID97_RS04740: ABID97_RS04740 - DUF2214 family protein, at 987,805 to 988,257
_RS04740
ABID97_RS04745: ABID97_RS04745 - fused MFS/spermidine synthase, at 988,264 to 990,291
_RS04745
Position (kb) 987
988
989 Strain fitness (log2 ratio) -2
-1
0
1 at 987.632 kb on + strand, within ABID97_RS04735 at 987.829 kb on + strand at 987.829 kb on + strand at 987.830 kb on - strand at 987.830 kb on - strand at 988.105 kb on + strand, within ABID97_RS04740 at 988.255 kb on + strand at 988.255 kb on + strand at 988.436 kb on - strand at 988.621 kb on + strand, within ABID97_RS04745 at 988.621 kb on + strand, within ABID97_RS04745 at 988.699 kb on + strand, within ABID97_RS04745 at 989.044 kb on + strand, within ABID97_RS04745 at 989.045 kb on - strand, within ABID97_RS04745 at 989.191 kb on + strand, within ABID97_RS04745 at 989.191 kb on + strand, within ABID97_RS04745 at 989.191 kb on + strand, within ABID97_RS04745 at 989.192 kb on - strand, within ABID97_RS04745 at 989.192 kb on - strand, within ABID97_RS04745 at 989.192 kb on - strand, within ABID97_RS04745 at 989.192 kb on - strand, within ABID97_RS04745
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 987,632 + ABID97_RS04735 0.89 -0.3 987,829 + -0.0 987,829 + -0.0 987,830 - -2.1 987,830 - -1.1 988,105 + ABID97_RS04740 0.66 -1.2 988,255 + +0.1 988,255 + -0.8 988,436 - -0.1 988,621 + ABID97_RS04745 0.18 +0.3 988,621 + ABID97_RS04745 0.18 -0.0 988,699 + ABID97_RS04745 0.21 +0.2 989,044 + ABID97_RS04745 0.38 +0.1 989,045 - ABID97_RS04745 0.39 -0.2 989,191 + ABID97_RS04745 0.46 -0.6 989,191 + ABID97_RS04745 0.46 +0.2 989,191 + ABID97_RS04745 0.46 +1.3 989,192 - ABID97_RS04745 0.46 -0.5 989,192 - ABID97_RS04745 0.46 -0.1 989,192 - ABID97_RS04745 0.46 +0.1 989,192 - ABID97_RS04745 0.46 +0.0
Or see this region's nucleotide sequence