Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02255

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02250 and ABID97_RS02255 are separated by 28 nucleotidesABID97_RS02255 and ABID97_RS02260 are separated by 182 nucleotidesABID97_RS02260 and ABID97_RS02265 are separated by 51 nucleotides ABID97_RS02250: ABID97_RS02250 - N-acetyl-gamma-glutamyl-phosphate reductase, at 455,713 to 456,636 _RS02250 ABID97_RS02255: ABID97_RS02255 - hypothetical protein, at 456,665 to 457,402 _RS02255 ABID97_RS02260: ABID97_RS02260 - inner membrane protein YiaA, at 457,585 to 458,022 _RS02260 ABID97_RS02265: ABID97_RS02265 - SRPBCC family protein, at 458,074 to 458,514 _RS02265 Position (kb) 456 457 458Strain fitness (log2 ratio) -2 -1 0 1at 455.675 kb on + strandat 455.675 kb on + strandat 455.675 kb on + strandat 455.675 kb on + strandat 455.676 kb on - strandat 455.676 kb on - strandat 455.676 kb on - strandat 455.676 kb on - strandat 455.676 kb on - strandat 455.680 kb on - strandat 455.680 kb on - strandat 455.689 kb on + strandat 455.689 kb on + strandat 455.689 kb on + strandat 455.698 kb on + strandat 455.704 kb on + strandat 455.704 kb on + strandat 455.704 kb on + strandat 456.723 kb on + strandat 456.723 kb on + strandat 456.723 kb on + strandat 456.723 kb on + strandat 456.723 kb on + strandat 456.724 kb on - strandat 456.724 kb on - strandat 456.724 kb on - strandat 456.724 kb on - strandat 456.724 kb on - strandat 456.724 kb on - strandat 457.137 kb on + strand, within ABID97_RS02255at 457.137 kb on + strand, within ABID97_RS02255at 457.137 kb on + strand, within ABID97_RS02255at 457.137 kb on + strand, within ABID97_RS02255at 457.138 kb on - strand, within ABID97_RS02255at 457.138 kb on - strand, within ABID97_RS02255at 457.138 kb on - strand, within ABID97_RS02255at 457.272 kb on + strand, within ABID97_RS02255at 457.272 kb on + strand, within ABID97_RS02255at 457.273 kb on - strand, within ABID97_RS02255at 457.432 kb on - strandat 457.476 kb on - strandat 457.663 kb on + strand, within ABID97_RS02260at 457.663 kb on + strand, within ABID97_RS02260at 457.711 kb on + strand, within ABID97_RS02260at 457.711 kb on + strand, within ABID97_RS02260at 457.714 kb on + strand, within ABID97_RS02260at 457.714 kb on + strand, within ABID97_RS02260at 457.714 kb on + strand, within ABID97_RS02260at 457.714 kb on + strand, within ABID97_RS02260at 457.714 kb on + strand, within ABID97_RS02260at 457.714 kb on + strand, within ABID97_RS02260at 457.714 kb on + strand, within ABID97_RS02260at 457.714 kb on + strand, within ABID97_RS02260at 457.714 kb on + strand, within ABID97_RS02260at 457.714 kb on + strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.715 kb on - strand, within ABID97_RS02260at 457.732 kb on + strand, within ABID97_RS02260at 457.732 kb on + strand, within ABID97_RS02260at 457.732 kb on + strand, within ABID97_RS02260at 457.733 kb on - strand, within ABID97_RS02260at 457.733 kb on - strand, within ABID97_RS02260at 457.733 kb on - strand, within ABID97_RS02260at 457.733 kb on - strand, within ABID97_RS02260at 457.733 kb on - strand, within ABID97_RS02260at 457.807 kb on + strand, within ABID97_RS02260at 457.807 kb on + strand, within ABID97_RS02260at 457.807 kb on + strand, within ABID97_RS02260at 457.808 kb on - strand, within ABID97_RS02260at 457.808 kb on - strand, within ABID97_RS02260at 457.808 kb on - strand, within ABID97_RS02260at 457.808 kb on - strand, within ABID97_RS02260at 457.903 kb on + strand, within ABID97_RS02260at 457.903 kb on + strand, within ABID97_RS02260at 457.903 kb on + strand, within ABID97_RS02260at 457.903 kb on + strand, within ABID97_RS02260at 457.903 kb on + strand, within ABID97_RS02260at 457.903 kb on + strandat 457.903 kb on + strand, within ABID97_RS02260at 457.903 kb on + strand, within ABID97_RS02260at 457.903 kb on + strand, within ABID97_RS02260at 457.903 kb on + strand, within ABID97_RS02260at 457.903 kb on + strand, within ABID97_RS02260at 457.903 kb on + strand, within ABID97_RS02260at 457.904 kb on - strand, within ABID97_RS02260at 457.904 kb on - strand, within ABID97_RS02260at 457.904 kb on - strand, within ABID97_RS02260at 457.904 kb on - strand, within ABID97_RS02260at 457.904 kb on - strand, within ABID97_RS02260at 457.904 kb on - strand, within ABID97_RS02260at 457.904 kb on - strand, within ABID97_RS02260at 457.904 kb on - strand, within ABID97_RS02260at 457.904 kb on - strand, within ABID97_RS02260at 458.004 kb on + strandat 458.005 kb on - strandat 458.231 kb on + strand, within ABID97_RS02265at 458.232 kb on - strand, within ABID97_RS02265at 458.232 kb on - strand, within ABID97_RS02265

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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455,675 + +0.5
455,675 + -0.2
455,675 + -0.8
455,675 + -0.3
455,676 - -0.6
455,676 - +0.0
455,676 - +0.6
455,676 - +0.0
455,676 - +0.7
455,680 - -2.5
455,680 - -0.0
455,689 + +0.1
455,689 + +0.1
455,689 + +0.1
455,698 + -0.4
455,704 + +0.1
455,704 + -0.3
455,704 + +0.0
456,723 + +0.0
456,723 + +0.0
456,723 + -0.7
456,723 + +0.2
456,723 + -0.3
456,724 - -0.7
456,724 - +0.2
456,724 - +0.3
456,724 - +1.1
456,724 - -0.3
456,724 - +1.0
457,137 + ABID97_RS02255 0.64 +0.3
457,137 + ABID97_RS02255 0.64 -0.4
457,137 + ABID97_RS02255 0.64 -0.6
457,137 + ABID97_RS02255 0.64 +0.3
457,138 - ABID97_RS02255 0.64 -0.2
457,138 - ABID97_RS02255 0.64 +0.7
457,138 - ABID97_RS02255 0.64 -0.3
457,272 + ABID97_RS02255 0.82 +0.2
457,272 + ABID97_RS02255 0.82 +0.2
457,273 - ABID97_RS02255 0.82 +0.8
457,432 - +0.2
457,476 - -0.1
457,663 + ABID97_RS02260 0.18 +0.6
457,663 + ABID97_RS02260 0.18 +0.1
457,711 + ABID97_RS02260 0.29 -0.1
457,711 + ABID97_RS02260 0.29 +0.9
457,714 + ABID97_RS02260 0.29 +0.4
457,714 + ABID97_RS02260 0.29 +0.4
457,714 + ABID97_RS02260 0.29 -0.3
457,714 + ABID97_RS02260 0.29 +0.0
457,714 + ABID97_RS02260 0.29 +0.4
457,714 + ABID97_RS02260 0.29 +0.4
457,714 + ABID97_RS02260 0.29 -0.9
457,714 + ABID97_RS02260 0.29 -0.6
457,714 + ABID97_RS02260 0.29 -0.4
457,714 + ABID97_RS02260 0.29 -0.4
457,715 - ABID97_RS02260 0.30 +0.2
457,715 - ABID97_RS02260 0.30 -0.4
457,715 - ABID97_RS02260 0.30 -0.9
457,715 - ABID97_RS02260 0.30 -0.0
457,715 - ABID97_RS02260 0.30 +0.9
457,715 - ABID97_RS02260 0.30 -0.5
457,715 - ABID97_RS02260 0.30 +0.1
457,715 - ABID97_RS02260 0.30 -0.5
457,715 - ABID97_RS02260 0.30 -0.3
457,715 - ABID97_RS02260 0.30 +0.1
457,715 - ABID97_RS02260 0.30 -0.0
457,715 - ABID97_RS02260 0.30 +0.2
457,715 - ABID97_RS02260 0.30 -0.0
457,715 - ABID97_RS02260 0.30 +0.7
457,715 - ABID97_RS02260 0.30 +0.2
457,715 - ABID97_RS02260 0.30 -0.0
457,715 - ABID97_RS02260 0.30 +0.8
457,732 + ABID97_RS02260 0.34 -0.3
457,732 + ABID97_RS02260 0.34 +1.1
457,732 + ABID97_RS02260 0.34 +0.1
457,733 - ABID97_RS02260 0.34 -0.6
457,733 - ABID97_RS02260 0.34 -0.1
457,733 - ABID97_RS02260 0.34 +1.1
457,733 - ABID97_RS02260 0.34 +0.5
457,733 - ABID97_RS02260 0.34 -0.8
457,807 + ABID97_RS02260 0.51 +0.1
457,807 + ABID97_RS02260 0.51 -0.3
457,807 + ABID97_RS02260 0.51 -0.4
457,808 - ABID97_RS02260 0.51 +0.2
457,808 - ABID97_RS02260 0.51 -0.4
457,808 - ABID97_RS02260 0.51 +0.0
457,808 - ABID97_RS02260 0.51 -0.1
457,903 + ABID97_RS02260 0.73 -0.0
457,903 + ABID97_RS02260 0.73 -0.8
457,903 + ABID97_RS02260 0.73 -0.3
457,903 + ABID97_RS02260 0.73 -0.3
457,903 + ABID97_RS02260 0.73 -0.4
457,903 + +1.7
457,903 + ABID97_RS02260 0.73 +0.6
457,903 + ABID97_RS02260 0.73 +0.1
457,903 + ABID97_RS02260 0.73 +0.1
457,903 + ABID97_RS02260 0.73 -0.3
457,903 + ABID97_RS02260 0.73 +0.5
457,903 + ABID97_RS02260 0.73 +0.2
457,904 - ABID97_RS02260 0.73 -0.1
457,904 - ABID97_RS02260 0.73 -0.2
457,904 - ABID97_RS02260 0.73 -0.3
457,904 - ABID97_RS02260 0.73 -0.5
457,904 - ABID97_RS02260 0.73 +0.7
457,904 - ABID97_RS02260 0.73 +1.4
457,904 - ABID97_RS02260 0.73 +0.2
457,904 - ABID97_RS02260 0.73 -0.2
457,904 - ABID97_RS02260 0.73 +0.7
458,004 + -0.7
458,005 - +0.0
458,231 + ABID97_RS02265 0.36 -0.0
458,232 - ABID97_RS02265 0.36 +0.3
458,232 - ABID97_RS02265 0.36 -0.1

Or see this region's nucleotide sequence