Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmY and ytjA are separated by 126 nucleotides ytjA and yjjU are separated by 121 nucleotides
b4376: osmY - periplasmic protein (NCBI), at 4,609,419 to 4,610,024
osmY
b4568: ytjA - predicted protein (RefSeq), at 4,610,151 to 4,610,312
ytjA
b4377: yjjU - predicted esterase (NCBI), at 4,610,434 to 4,611,507
yjjU
Position (kb)
4610
4611 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4609.196 kb on + strand at 4609.233 kb on - strand at 4609.258 kb on + strand at 4609.322 kb on + strand at 4609.322 kb on - strand at 4609.337 kb on - strand at 4609.339 kb on + strand at 4609.339 kb on + strand at 4609.354 kb on + strand at 4609.354 kb on - strand at 4609.408 kb on - strand at 4609.408 kb on - strand at 4609.611 kb on - strand, within osmY at 4609.635 kb on + strand, within osmY at 4609.635 kb on + strand, within osmY at 4609.652 kb on - strand, within osmY at 4609.680 kb on + strand, within osmY at 4609.683 kb on - strand, within osmY at 4609.714 kb on - strand, within osmY at 4609.867 kb on + strand, within osmY at 4609.914 kb on + strand, within osmY at 4609.922 kb on - strand at 4609.977 kb on + strand at 4609.994 kb on - strand at 4609.994 kb on - strand at 4610.064 kb on + strand at 4610.068 kb on + strand at 4610.110 kb on + strand at 4610.110 kb on + strand at 4610.280 kb on - strand, within ytjA at 4610.343 kb on + strand at 4610.345 kb on + strand at 4610.427 kb on + strand at 4610.445 kb on + strand at 4610.445 kb on + strand at 4610.457 kb on - strand at 4610.458 kb on - strand at 4610.514 kb on + strand at 4610.576 kb on - strand, within yjjU at 4610.676 kb on + strand, within yjjU at 4610.820 kb on - strand, within yjjU at 4610.833 kb on + strand, within yjjU at 4610.849 kb on + strand, within yjjU at 4610.870 kb on - strand, within yjjU at 4610.913 kb on - strand, within yjjU at 4610.913 kb on - strand, within yjjU at 4610.963 kb on - strand, within yjjU at 4611.050 kb on + strand, within yjjU at 4611.198 kb on - strand, within yjjU at 4611.219 kb on + strand, within yjjU at 4611.241 kb on + strand, within yjjU at 4611.251 kb on + strand, within yjjU at 4611.251 kb on + strand, within yjjU at 4611.257 kb on + strand, within yjjU
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,609,196 + +0.5 4,609,233 - +0.9 4,609,258 + +0.6 4,609,322 + -0.8 4,609,322 - -0.5 4,609,337 - +0.6 4,609,339 + -0.1 4,609,339 + -0.1 4,609,354 + +0.2 4,609,354 - -0.5 4,609,408 - +0.3 4,609,408 - -0.2 4,609,611 - osmY b4376 0.32 +0.1 4,609,635 + osmY b4376 0.36 +0.1 4,609,635 + osmY b4376 0.36 +0.4 4,609,652 - osmY b4376 0.38 -0.8 4,609,680 + osmY b4376 0.43 +0.1 4,609,683 - osmY b4376 0.44 -0.6 4,609,714 - osmY b4376 0.49 +0.1 4,609,867 + osmY b4376 0.74 +0.5 4,609,914 + osmY b4376 0.82 +0.1 4,609,922 - +2.6 4,609,977 + +0.4 4,609,994 - -0.2 4,609,994 - +0.7 4,610,064 + -0.5 4,610,068 + -0.4 4,610,110 + +0.8 4,610,110 + +0.6 4,610,280 - ytjA b4568 0.80 +0.6 4,610,343 + +0.4 4,610,345 + -0.3 4,610,427 + -1.5 4,610,445 + +0.3 4,610,445 + -0.9 4,610,457 - -0.4 4,610,458 - -1.1 4,610,514 + -2.4 4,610,576 - yjjU b4377 0.13 +0.3 4,610,676 + yjjU b4377 0.23 -0.4 4,610,820 - yjjU b4377 0.36 +0.6 4,610,833 + yjjU b4377 0.37 +0.9 4,610,849 + yjjU b4377 0.39 +0.3 4,610,870 - yjjU b4377 0.41 -0.5 4,610,913 - yjjU b4377 0.45 -1.2 4,610,913 - yjjU b4377 0.45 -1.0 4,610,963 - yjjU b4377 0.49 +0.3 4,611,050 + yjjU b4377 0.57 +0.1 4,611,198 - yjjU b4377 0.71 +0.4 4,611,219 + yjjU b4377 0.73 +0.2 4,611,241 + yjjU b4377 0.75 +0.6 4,611,251 + yjjU b4377 0.76 +0.7 4,611,251 + yjjU b4377 0.76 +1.3 4,611,257 + yjjU b4377 0.77 -0.0
Or see this region's nucleotide sequence