Strain Fitness in Escherichia coli BW25113 around b3223

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
3,367,386	-	yhcH	b3221	0.75	-0.3
3,367,386	-	yhcH	b3221	0.75	+0.4
3,367,444	-	yhcH	b3221	0.88	-0.8
3,367,452	-	yhcH	b3221	0.89	-0.7
3,367,454	+				-0.9
3,367,480	-				-0.4
3,367,480	-				+0.1
3,367,489	+				-1.2
3,367,523	-				+0.6
3,367,600	+	yhcI	b3222	0.12	+0.1
3,367,600	+	yhcI	b3222	0.12	-1.7
3,367,666	-	yhcI	b3222	0.19	+0.8
3,367,678	+	yhcI	b3222	0.21	+0.5
3,367,678	+	yhcI	b3222	0.21	-0.3
3,367,691	+	yhcI	b3222	0.22	+0.5
3,367,691	+	yhcI	b3222	0.22	-1.2
3,367,725	+	yhcI	b3222	0.26	+0.3
3,367,728	+	yhcI	b3222	0.26	-0.2
3,367,768	-	yhcI	b3222	0.31	-1.4
3,367,855	-	yhcI	b3222	0.41	+1.0
3,367,855	-	yhcI	b3222	0.41	-0.8
3,367,901	+	yhcI	b3222	0.46	-0.5
3,368,002	+	yhcI	b3222	0.58	+0.5
3,368,179	-	yhcI	b3222	0.78	+0.5
3,368,179	-	yhcI	b3222	0.78	+1.1
3,368,184	-	yhcI	b3222	0.78	-1.2
3,368,285	+				+2.2
3,368,327	-				-0.4
3,368,368	+				+0.3
3,368,585	+	nanE	b3223	0.31	-0.1
3,368,593	-	nanE	b3223	0.32	-0.9
3,368,696	-	nanE	b3223	0.47	+1.0
3,368,699	+	nanE	b3223	0.48	+0.3
3,368,699	+	nanE	b3223	0.48	+0.1
3,368,703	+	nanE	b3223	0.48	-0.3
3,368,768	+	nanE	b3223	0.58	-1.8
3,368,780	+	nanE	b3223	0.60	-0.6
3,368,791	+	nanE	b3223	0.61	+0.1
3,368,791	+	nanE	b3223	0.61	-0.4
3,368,887	+	nanE	b3223	0.75	+0.0
3,368,989	-	nanE	b3223	0.90	+0.1
3,368,989	-	nanE	b3223	0.90	+0.6
3,369,084	+				-3.5
3,369,297	+	nanT	b3224	0.13	-0.1
3,369,480	+	nanT	b3224	0.25	-0.9
3,369,488	-	nanT	b3224	0.26	+0.1
3,369,488	-	nanT	b3224	0.26	+1.7
3,369,538	-	nanT	b3224	0.29	+0.1
3,369,640	+	nanT	b3224	0.36	-0.2
3,369,669	+	nanT	b3224	0.38	+0.1
3,369,791	-	nanT	b3224	0.46	+1.8
3,369,793	+	nanT	b3224	0.46	-0.4
3,369,831	-	nanT	b3224	0.49	-1.1
3,369,941	+	nanT	b3224	0.56	-0.2
3,370,043	-	nanT	b3224	0.63	+0.0