Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygaA and norV are separated by 186 nucleotides norV and norW overlap by 4 nucleotides
b2709: ygaA - putative 2-component transcriptional regulator (VIMSS), at 2,828,797 to 2,830,311
ygaA
b2710: norV - anaerobic nitric oxide reductase flavorubredoxin (NCBI), at 2,830,498 to 2,831,937
norV
b2711: norW - nitric oxide reductase (NCBI), at 2,831,934 to 2,833,067
norW
Position (kb)
2830
2831
2832 Strain fitness (log2 ratio)
-2
-1
0
1 at 2829.527 kb on + strand, within ygaA at 2829.527 kb on + strand, within ygaA at 2829.544 kb on - strand, within ygaA at 2829.583 kb on + strand, within ygaA at 2829.583 kb on + strand, within ygaA at 2829.687 kb on + strand, within ygaA at 2829.687 kb on + strand, within ygaA at 2829.846 kb on - strand, within ygaA at 2829.869 kb on - strand, within ygaA at 2829.871 kb on + strand, within ygaA at 2829.966 kb on + strand, within ygaA at 2829.979 kb on - strand, within ygaA at 2830.059 kb on - strand, within ygaA at 2830.059 kb on - strand, within ygaA at 2830.129 kb on - strand, within ygaA at 2830.141 kb on + strand, within ygaA at 2830.141 kb on + strand, within ygaA at 2830.152 kb on - strand, within ygaA at 2830.260 kb on - strand at 2830.683 kb on - strand, within norV at 2830.683 kb on - strand, within norV at 2830.708 kb on - strand, within norV at 2830.708 kb on - strand, within norV at 2830.743 kb on + strand, within norV at 2830.756 kb on - strand, within norV at 2830.756 kb on - strand, within norV at 2830.821 kb on + strand, within norV at 2830.983 kb on + strand, within norV at 2830.986 kb on - strand, within norV at 2830.986 kb on - strand, within norV at 2831.011 kb on - strand, within norV at 2831.011 kb on - strand, within norV at 2831.018 kb on - strand, within norV at 2831.018 kb on - strand, within norV at 2831.075 kb on - strand, within norV at 2831.075 kb on - strand, within norV at 2831.092 kb on - strand, within norV at 2831.109 kb on + strand, within norV at 2831.134 kb on + strand, within norV at 2831.273 kb on + strand, within norV at 2831.273 kb on + strand, within norV at 2831.314 kb on + strand, within norV at 2831.314 kb on + strand, within norV at 2831.629 kb on + strand, within norV at 2831.646 kb on - strand, within norV at 2831.646 kb on - strand, within norV at 2831.651 kb on + strand, within norV at 2831.706 kb on - strand, within norV at 2831.732 kb on - strand, within norV at 2831.748 kb on + strand, within norV at 2831.748 kb on + strand, within norV at 2831.829 kb on + strand at 2831.934 kb on - strand at 2831.957 kb on - strand at 2832.048 kb on + strand, within norW at 2832.064 kb on - strand, within norW at 2832.150 kb on - strand, within norW at 2832.281 kb on + strand, within norW at 2832.281 kb on + strand, within norW at 2832.364 kb on + strand, within norW at 2832.384 kb on - strand, within norW at 2832.384 kb on - strand, within norW at 2832.526 kb on + strand, within norW at 2832.896 kb on - strand, within norW
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 2,829,527 + ygaA b2709 0.48 -1.9 2,829,527 + ygaA b2709 0.48 -0.7 2,829,544 - ygaA b2709 0.49 +0.3 2,829,583 + ygaA b2709 0.52 +0.6 2,829,583 + ygaA b2709 0.52 +0.2 2,829,687 + ygaA b2709 0.59 +0.3 2,829,687 + ygaA b2709 0.59 +0.0 2,829,846 - ygaA b2709 0.69 -1.0 2,829,869 - ygaA b2709 0.71 +0.4 2,829,871 + ygaA b2709 0.71 -0.1 2,829,966 + ygaA b2709 0.77 +0.3 2,829,979 - ygaA b2709 0.78 +0.2 2,830,059 - ygaA b2709 0.83 -2.6 2,830,059 - ygaA b2709 0.83 +0.3 2,830,129 - ygaA b2709 0.88 -0.6 2,830,141 + ygaA b2709 0.89 +0.3 2,830,141 + ygaA b2709 0.89 +0.3 2,830,152 - ygaA b2709 0.89 -0.5 2,830,260 - +0.3 2,830,683 - norV b2710 0.13 +0.1 2,830,683 - norV b2710 0.13 +0.7 2,830,708 - norV b2710 0.15 -1.8 2,830,708 - norV b2710 0.15 -0.6 2,830,743 + norV b2710 0.17 -1.4 2,830,756 - norV b2710 0.18 -0.6 2,830,756 - norV b2710 0.18 -0.3 2,830,821 + norV b2710 0.22 -0.1 2,830,983 + norV b2710 0.34 -0.8 2,830,986 - norV b2710 0.34 -0.5 2,830,986 - norV b2710 0.34 +0.7 2,831,011 - norV b2710 0.36 -0.6 2,831,011 - norV b2710 0.36 +0.1 2,831,018 - norV b2710 0.36 +0.4 2,831,018 - norV b2710 0.36 +0.1 2,831,075 - norV b2710 0.40 -0.5 2,831,075 - norV b2710 0.40 -0.1 2,831,092 - norV b2710 0.41 -1.0 2,831,109 + norV b2710 0.42 +0.2 2,831,134 + norV b2710 0.44 +0.0 2,831,273 + norV b2710 0.54 +0.2 2,831,273 + norV b2710 0.54 +0.4 2,831,314 + norV b2710 0.57 +1.2 2,831,314 + norV b2710 0.57 -0.5 2,831,629 + norV b2710 0.79 -0.0 2,831,646 - norV b2710 0.80 +0.6 2,831,646 - norV b2710 0.80 -0.9 2,831,651 + norV b2710 0.80 +0.1 2,831,706 - norV b2710 0.84 -0.9 2,831,732 - norV b2710 0.86 -0.3 2,831,748 + norV b2710 0.87 -1.6 2,831,748 + norV b2710 0.87 -0.8 2,831,829 + +0.0 2,831,934 - +0.5 2,831,957 - -0.3 2,832,048 + norW b2711 0.10 -0.2 2,832,064 - norW b2711 0.11 -0.4 2,832,150 - norW b2711 0.19 +1.3 2,832,281 + norW b2711 0.31 +0.1 2,832,281 + norW b2711 0.31 +0.5 2,832,364 + norW b2711 0.38 +0.4 2,832,384 - norW b2711 0.40 +0.1 2,832,384 - norW b2711 0.40 +1.2 2,832,526 + norW b2711 0.52 +0.7 2,832,896 - norW b2711 0.85 -0.4
Or see this region's nucleotide sequence