Strain Fitness in Escherichia coli BW25113 around b2605

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfiN and yfiB are separated by 15 nucleotidesyfiB and rplS are separated by 75 nucleotidesrplS and trmD are separated by 41 nucleotides b2604: yfiN - predicted diguanylate cyclase (NCBI), at 2,740,405 to 2,741,631 yfiN b2605: yfiB - predicted outer membrane lipoprotein (NCBI), at 2,741,647 to 2,742,129 yfiB b2606: rplS - 50S ribosomal protein L19 (NCBI), at 2,742,205 to 2,742,552 rplS b2607: trmD - tRNA (guanine-N(1)-)-methyltransferase (NCBI), at 2,742,594 to 2,743,361 trmD Position (kb) 2741 2742 2743Strain fitness (log2 ratio) -1 0 1at 2740.661 kb on - strand, within yfiNat 2740.786 kb on - strand, within yfiNat 2740.786 kb on - strand, within yfiNat 2740.786 kb on - strand, within yfiNat 2740.786 kb on - strand, within yfiNat 2740.888 kb on + strand, within yfiNat 2740.898 kb on + strand, within yfiNat 2740.987 kb on + strand, within yfiNat 2740.987 kb on + strand, within yfiNat 2741.136 kb on + strand, within yfiNat 2741.136 kb on + strand, within yfiNat 2741.149 kb on + strand, within yfiNat 2741.289 kb on + strand, within yfiNat 2741.397 kb on + strand, within yfiNat 2741.397 kb on + strand, within yfiNat 2741.407 kb on - strand, within yfiNat 2741.414 kb on - strand, within yfiNat 2741.439 kb on + strand, within yfiNat 2741.447 kb on + strand, within yfiNat 2741.542 kb on + strandat 2741.682 kb on - strandat 2741.682 kb on - strandat 2741.721 kb on + strand, within yfiBat 2741.854 kb on - strand, within yfiBat 2741.875 kb on + strand, within yfiBat 2741.875 kb on + strand, within yfiBat 2741.899 kb on - strand, within yfiBat 2741.994 kb on + strand, within yfiBat 2741.994 kb on + strand, within yfiBat 2742.002 kb on - strand, within yfiBat 2742.076 kb on + strand, within yfiBat 2742.111 kb on + strandat 2742.111 kb on + strandat 2742.169 kb on - strandat 2742.169 kb on - strandat 2742.182 kb on - strandat 2742.182 kb on - strandat 2742.227 kb on - strandat 2742.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,740,661 - yfiN b2604 0.21 -0.8
2,740,786 - yfiN b2604 0.31 +0.9
2,740,786 - yfiN b2604 0.31 +0.4
2,740,786 - yfiN b2604 0.31 -1.2
2,740,786 - yfiN b2604 0.31 +0.1
2,740,888 + yfiN b2604 0.39 -0.4
2,740,898 + yfiN b2604 0.40 +0.4
2,740,987 + yfiN b2604 0.47 -1.0
2,740,987 + yfiN b2604 0.47 +0.2
2,741,136 + yfiN b2604 0.60 +0.1
2,741,136 + yfiN b2604 0.60 -0.1
2,741,149 + yfiN b2604 0.61 +0.7
2,741,289 + yfiN b2604 0.72 -0.8
2,741,397 + yfiN b2604 0.81 -0.4
2,741,397 + yfiN b2604 0.81 -1.4
2,741,407 - yfiN b2604 0.82 +0.5
2,741,414 - yfiN b2604 0.82 +0.2
2,741,439 + yfiN b2604 0.84 -0.0
2,741,447 + yfiN b2604 0.85 +0.3
2,741,542 + -0.7
2,741,682 - -0.3
2,741,682 - +1.3
2,741,721 + yfiB b2605 0.15 +0.3
2,741,854 - yfiB b2605 0.43 +0.1
2,741,875 + yfiB b2605 0.47 -0.1
2,741,875 + yfiB b2605 0.47 -0.2
2,741,899 - yfiB b2605 0.52 -0.4
2,741,994 + yfiB b2605 0.72 +0.3
2,741,994 + yfiB b2605 0.72 +1.1
2,742,002 - yfiB b2605 0.73 +0.3
2,742,076 + yfiB b2605 0.89 +0.3
2,742,111 + +0.6
2,742,111 + -1.1
2,742,169 - -0.1
2,742,169 - -0.4
2,742,182 - +0.4
2,742,182 - -0.8
2,742,227 - -0.8
2,742,626 - -0.0

Or see this region's nucleotide sequence