Strain Fitness in Escherichia coli BW25113 around b2603

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
2,738,897	+	aroF	b2601	0.74	-5.9
2,738,899	+	aroF	b2601	0.74	-3.0
2,738,905	+	aroF	b2601	0.75	-3.1
2,738,926	+	aroF	b2601	0.77	-2.4
2,738,926	+	aroF	b2601	0.77	-2.9
2,738,945	-	aroF	b2601	0.79	-3.4
2,738,999	-	aroF	b2601	0.84	-2.3
2,738,999	-	aroF	b2601	0.84	-1.4
2,739,001	+	aroF	b2601	0.84	-2.0
2,739,008	-	aroF	b2601	0.85	-0.6
2,739,008	-	aroF	b2601	0.85	-0.0
2,739,420	+	yfiL	b2602	0.10	-0.3
2,739,431	+	yfiL	b2602	0.13	-0.2
2,739,431	+	yfiL	b2602	0.13	+0.7
2,739,470	+	yfiL	b2602	0.24	+0.4
2,739,473	-	yfiL	b2602	0.25	-0.1
2,739,478	-	yfiL	b2602	0.26	+0.8
2,739,478	-	yfiL	b2602	0.26	+0.1
2,739,479	+	yfiL	b2602	0.27	-0.0
2,739,490	+	yfiL	b2602	0.30	-0.2
2,739,492	-	yfiL	b2602	0.30	+1.8
2,739,499	-	yfiL	b2602	0.32	+0.6
2,739,499	-	yfiL	b2602	0.32	+0.7
2,739,545	+	yfiL	b2602	0.45	+1.2
2,739,545	+	yfiL	b2602	0.45	+0.3
2,739,571	+	yfiL	b2602	0.52	-0.0
2,739,571	-	yfiL	b2602	0.52	-0.0
2,739,571	-	yfiL	b2602	0.52	+1.4
2,739,575	-	yfiL	b2602	0.53	-0.3
2,739,575	-	yfiL	b2602	0.53	-0.4
2,739,577	+	yfiL	b2602	0.53	+0.4
2,739,578	-	yfiL	b2602	0.54	+0.5
2,739,578	-	yfiL	b2602	0.54	+0.2
2,739,588	-	yfiL	b2602	0.56	+0.1
2,739,650	+	yfiL	b2602	0.73	+0.3
2,739,676	-	yfiL	b2602	0.80	-0.4
2,739,676	-	yfiL	b2602	0.80	+0.1
2,739,677	+	yfiL	b2602	0.81	+0.5
2,739,677	+	yfiL	b2602	0.81	-0.2
2,739,697	+	yfiL	b2602	0.86	+0.1
2,739,697	+	yfiL	b2602	0.86	+0.1
2,739,705	-	yfiL	b2602	0.88	+2.6
2,739,817	-				+0.4
2,739,914	+				+0.0
2,739,914	+				-0.1
2,739,951	-	yfiR	b2603	0.10	-0.2
2,739,959	+	yfiR	b2603	0.12	+0.5
2,739,963	-	yfiR	b2603	0.13	+0.6
2,739,967	-	yfiR	b2603	0.13	-0.6
2,739,969	-	yfiR	b2603	0.14	+0.2
2,739,970	+	yfiR	b2603	0.14	-0.0
2,739,970	-	yfiR	b2603	0.14	-0.6
2,740,012	-	yfiR	b2603	0.22	+1.4
2,740,021	-	yfiR	b2603	0.24	+0.3
2,740,081	+	yfiR	b2603	0.35	-0.2
2,740,090	+	yfiR	b2603	0.37	-1.5
2,740,092	+	yfiR	b2603	0.38	+0.4
2,740,092	+	yfiR	b2603	0.38	-0.0
2,740,127	+	yfiR	b2603	0.44	-1.0
2,740,127	+	yfiR	b2603	0.44	+0.7
2,740,127	+	yfiR	b2603	0.44	+0.1
2,740,146	+	yfiR	b2603	0.48	-0.1
2,740,146	+	yfiR	b2603	0.48	-0.5
2,740,146	+	yfiR	b2603	0.48	-0.1
2,740,154	-	yfiR	b2603	0.50	-0.4
2,740,233	-	yfiR	b2603	0.65	+2.0
2,740,284	-	yfiR	b2603	0.75	+0.1
2,740,284	-	yfiR	b2603	0.75	-0.2
2,740,313	-	yfiR	b2603	0.80	-0.7
2,740,357	+	yfiR	b2603	0.89	-0.1
2,740,357	+	yfiR	b2603	0.89	-0.4
2,740,360	+	yfiR	b2603	0.89	-0.2
2,740,362	+	yfiR	b2603	0.90	+0.3
2,740,362	+	yfiR	b2603	0.90	-0.0
2,740,365	-				+0.4
2,740,368	-				-0.9
2,740,368	-				-0.9
2,740,368	-				+0.3
2,740,368	-				-1.6
2,740,368	-				+0.3
2,740,368	-				-0.9
2,740,368	-				-0.3
2,740,380	-				-0.7
2,740,388	-				+0.3
2,740,390	-				-0.7
2,740,441	+				+1.0
2,740,463	+				+0.4
2,740,478	+				+0.3
2,740,490	-				-1.2
2,740,536	-				+1.0
2,740,592	-	yfiN	b2604	0.15	+1.5
2,740,622	+	yfiN	b2604	0.18	+1.1
2,740,622	+	yfiN	b2604	0.18	-0.5
2,740,632	+	yfiN	b2604	0.19	-0.4
2,740,661	-	yfiN	b2604	0.21	-0.8
2,740,786	-	yfiN	b2604	0.31	+0.9
2,740,786	-	yfiN	b2604	0.31	+0.4
2,740,786	-	yfiN	b2604	0.31	-1.2
2,740,786	-	yfiN	b2604	0.31	+0.1
2,740,888	+	yfiN	b2604	0.39	-0.4
2,740,898	+	yfiN	b2604	0.40	+0.4
2,740,987	+	yfiN	b2604	0.47	-1.0
2,740,987	+	yfiN	b2604	0.47	+0.2
2,741,136	+	yfiN	b2604	0.60	+0.1
2,741,136	+	yfiN	b2604	0.60	-0.1
2,741,149	+	yfiN	b2604	0.61	+0.7
2,741,289	+	yfiN	b2604	0.72	-0.8
2,741,397	+	yfiN	b2604	0.81	-0.4
2,741,397	+	yfiN	b2604	0.81	-1.4
2,741,407	-	yfiN	b2604	0.82	+0.5
2,741,414	-	yfiN	b2604	0.82	+0.2