Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfbQ and yfbR are separated by 83 nucleotides yfbR and yfbS are separated by 58 nucleotides
b2290: yfbQ - aspartate aminotransferase (NCBI), at 2,405,583 to 2,406,800
yfbQ
b2291: yfbR - hypothetical protein (NCBI), at 2,406,884 to 2,407,483
yfbR
b2292: yfbS - predicted transporter (NCBI), at 2,407,542 to 2,409,374
yfbS
Position (kb)
2406
2407
2408 Strain fitness (log2 ratio)
-2
-1
0
1 at 2405.890 kb on + strand, within yfbQ at 2405.933 kb on - strand, within yfbQ at 2405.958 kb on + strand, within yfbQ at 2405.958 kb on + strand, within yfbQ at 2405.964 kb on - strand, within yfbQ at 2405.971 kb on - strand, within yfbQ at 2405.971 kb on - strand, within yfbQ at 2405.971 kb on - strand, within yfbQ at 2405.971 kb on - strand, within yfbQ at 2405.972 kb on + strand, within yfbQ at 2405.973 kb on - strand, within yfbQ at 2405.976 kb on - strand, within yfbQ at 2406.035 kb on + strand, within yfbQ at 2406.035 kb on + strand, within yfbQ at 2406.045 kb on + strand, within yfbQ at 2406.053 kb on - strand, within yfbQ at 2406.135 kb on - strand, within yfbQ at 2406.136 kb on + strand, within yfbQ at 2406.136 kb on + strand, within yfbQ at 2406.147 kb on - strand, within yfbQ at 2406.147 kb on - strand, within yfbQ at 2406.159 kb on + strand, within yfbQ at 2406.165 kb on - strand, within yfbQ at 2406.179 kb on + strand, within yfbQ at 2406.179 kb on + strand, within yfbQ at 2406.187 kb on - strand, within yfbQ at 2406.334 kb on + strand, within yfbQ at 2406.339 kb on + strand, within yfbQ at 2406.339 kb on + strand, within yfbQ at 2406.347 kb on - strand, within yfbQ at 2406.347 kb on - strand, within yfbQ at 2406.474 kb on - strand, within yfbQ at 2406.584 kb on - strand, within yfbQ at 2406.584 kb on - strand, within yfbQ at 2406.684 kb on + strand at 2406.692 kb on - strand at 2406.692 kb on - strand at 2406.692 kb on - strand at 2406.692 kb on - strand at 2406.726 kb on - strand at 2406.865 kb on + strand at 2407.100 kb on - strand, within yfbR at 2407.167 kb on - strand, within yfbR at 2407.230 kb on - strand, within yfbR at 2407.256 kb on - strand, within yfbR at 2407.466 kb on - strand at 2407.483 kb on - strand at 2407.483 kb on - strand at 2407.485 kb on - strand at 2407.485 kb on - strand at 2407.558 kb on + strand at 2407.677 kb on - strand at 2407.677 kb on - strand at 2407.769 kb on - strand, within yfbS at 2407.775 kb on + strand, within yfbS at 2407.777 kb on + strand, within yfbS at 2407.806 kb on - strand, within yfbS at 2407.812 kb on - strand, within yfbS at 2407.812 kb on - strand, within yfbS at 2408.014 kb on - strand, within yfbS at 2408.073 kb on + strand, within yfbS at 2408.126 kb on + strand, within yfbS at 2408.145 kb on - strand, within yfbS at 2408.164 kb on - strand, within yfbS at 2408.166 kb on + strand, within yfbS at 2408.191 kb on + strand, within yfbS at 2408.252 kb on + strand, within yfbS at 2408.252 kb on + strand, within yfbS at 2408.275 kb on + strand, within yfbS at 2408.400 kb on + strand, within yfbS at 2408.408 kb on - strand, within yfbS at 2408.408 kb on - strand, within yfbS at 2408.413 kb on - strand, within yfbS
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 2,405,890 + yfbQ b2290 0.25 -1.6 2,405,933 - yfbQ b2290 0.29 +0.1 2,405,958 + yfbQ b2290 0.31 -1.9 2,405,958 + yfbQ b2290 0.31 -0.8 2,405,964 - yfbQ b2290 0.31 +1.5 2,405,971 - yfbQ b2290 0.32 +0.4 2,405,971 - yfbQ b2290 0.32 -0.7 2,405,971 - yfbQ b2290 0.32 +0.4 2,405,971 - yfbQ b2290 0.32 -0.0 2,405,972 + yfbQ b2290 0.32 -0.8 2,405,973 - yfbQ b2290 0.32 -1.2 2,405,976 - yfbQ b2290 0.32 +0.4 2,406,035 + yfbQ b2290 0.37 -0.3 2,406,035 + yfbQ b2290 0.37 -0.4 2,406,045 + yfbQ b2290 0.38 -2.4 2,406,053 - yfbQ b2290 0.39 +0.3 2,406,135 - yfbQ b2290 0.45 +0.5 2,406,136 + yfbQ b2290 0.45 -0.9 2,406,136 + yfbQ b2290 0.45 +0.5 2,406,147 - yfbQ b2290 0.46 +0.8 2,406,147 - yfbQ b2290 0.46 +0.1 2,406,159 + yfbQ b2290 0.47 -0.5 2,406,165 - yfbQ b2290 0.48 -0.6 2,406,179 + yfbQ b2290 0.49 -0.9 2,406,179 + yfbQ b2290 0.49 +0.2 2,406,187 - yfbQ b2290 0.50 -0.0 2,406,334 + yfbQ b2290 0.62 -1.5 2,406,339 + yfbQ b2290 0.62 -1.9 2,406,339 + yfbQ b2290 0.62 -0.1 2,406,347 - yfbQ b2290 0.63 +0.3 2,406,347 - yfbQ b2290 0.63 +0.2 2,406,474 - yfbQ b2290 0.73 +0.4 2,406,584 - yfbQ b2290 0.82 -0.4 2,406,584 - yfbQ b2290 0.82 -0.4 2,406,684 + -1.4 2,406,692 - +0.3 2,406,692 - +0.6 2,406,692 - +0.5 2,406,692 - -0.2 2,406,726 - -1.0 2,406,865 + +0.7 2,407,100 - yfbR b2291 0.36 +0.9 2,407,167 - yfbR b2291 0.47 +0.2 2,407,230 - yfbR b2291 0.58 +0.6 2,407,256 - yfbR b2291 0.62 +0.2 2,407,466 - -2.3 2,407,483 - +1.2 2,407,483 - -1.1 2,407,485 - -0.1 2,407,485 - -0.0 2,407,558 + -1.7 2,407,677 - +0.5 2,407,677 - +0.4 2,407,769 - yfbS b2292 0.12 -0.4 2,407,775 + yfbS b2292 0.13 -1.8 2,407,777 + yfbS b2292 0.13 +0.3 2,407,806 - yfbS b2292 0.14 +0.6 2,407,812 - yfbS b2292 0.15 +0.4 2,407,812 - yfbS b2292 0.15 +0.1 2,408,014 - yfbS b2292 0.26 -0.1 2,408,073 + yfbS b2292 0.29 -1.0 2,408,126 + yfbS b2292 0.32 -0.0 2,408,145 - yfbS b2292 0.33 +0.5 2,408,164 - yfbS b2292 0.34 +0.0 2,408,166 + yfbS b2292 0.34 +0.5 2,408,191 + yfbS b2292 0.35 +0.3 2,408,252 + yfbS b2292 0.39 -2.5 2,408,252 + yfbS b2292 0.39 -0.5 2,408,275 + yfbS b2292 0.40 -0.2 2,408,400 + yfbS b2292 0.47 +0.2 2,408,408 - yfbS b2292 0.47 +0.3 2,408,408 - yfbS b2292 0.47 +1.1 2,408,413 - yfbS b2292 0.48 +0.2
Or see this region's nucleotide sequence