Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bcr and rsuA are separated by 27 nucleotides rsuA and yejH are separated by 148 nucleotides
b2182: bcr - bicyclomycin/multidrug efflux system (NCBI), at 2,276,592 to 2,277,782
bcr
b2183: rsuA - 16S rRNA pseudouridylate 516 synthase (NCBI), at 2,277,810 to 2,278,505
rsuA
b2184: yejH - DNA damage response helicase (yejH or radD) (from data) , at 2,278,654 to 2,280,414
yejH
Position (kb)
2277
2278
2279 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2276.885 kb on - strand, within bcr at 2276.892 kb on - strand, within bcr at 2276.892 kb on - strand, within bcr at 2276.950 kb on - strand, within bcr at 2276.950 kb on - strand, within bcr at 2277.132 kb on + strand, within bcr at 2277.137 kb on + strand, within bcr at 2277.197 kb on + strand, within bcr at 2277.287 kb on + strand, within bcr at 2277.287 kb on + strand, within bcr at 2277.352 kb on - strand, within bcr at 2277.352 kb on - strand, within bcr at 2277.352 kb on - strand, within bcr at 2277.422 kb on - strand, within bcr at 2277.445 kb on + strand, within bcr at 2277.573 kb on + strand, within bcr at 2277.625 kb on - strand, within bcr at 2277.628 kb on - strand, within bcr at 2277.641 kb on + strand, within bcr at 2277.695 kb on + strand at 2277.695 kb on + strand at 2277.696 kb on + strand at 2277.759 kb on + strand at 2277.767 kb on + strand at 2278.002 kb on - strand, within rsuA at 2278.018 kb on - strand, within rsuA at 2278.126 kb on - strand, within rsuA at 2278.173 kb on + strand, within rsuA at 2278.266 kb on - strand, within rsuA at 2278.285 kb on - strand, within rsuA at 2278.462 kb on - strand at 2278.560 kb on - strand at 2278.678 kb on - strand at 2278.720 kb on + strand at 2278.720 kb on + strand at 2278.785 kb on + strand at 2278.785 kb on + strand at 2278.824 kb on + strand at 2278.824 kb on + strand at 2278.834 kb on - strand, within yejH at 2278.845 kb on + strand, within yejH at 2278.897 kb on + strand, within yejH at 2279.324 kb on - strand, within yejH at 2279.324 kb on - strand, within yejH at 2279.480 kb on + strand, within yejH
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 2,276,885 - bcr b2182 0.25 -0.2 2,276,892 - bcr b2182 0.25 +0.2 2,276,892 - bcr b2182 0.25 +0.5 2,276,950 - bcr b2182 0.30 -0.2 2,276,950 - bcr b2182 0.30 +2.0 2,277,132 + bcr b2182 0.45 -0.4 2,277,137 + bcr b2182 0.46 -0.2 2,277,197 + bcr b2182 0.51 +0.5 2,277,287 + bcr b2182 0.58 -2.0 2,277,287 + bcr b2182 0.58 -2.0 2,277,352 - bcr b2182 0.64 -0.9 2,277,352 - bcr b2182 0.64 -1.6 2,277,352 - bcr b2182 0.64 -0.7 2,277,422 - bcr b2182 0.70 -0.7 2,277,445 + bcr b2182 0.72 -0.2 2,277,573 + bcr b2182 0.82 -1.0 2,277,625 - bcr b2182 0.87 +0.4 2,277,628 - bcr b2182 0.87 -0.6 2,277,641 + bcr b2182 0.88 +0.3 2,277,695 + -0.0 2,277,695 + +0.5 2,277,696 + +0.5 2,277,759 + -0.0 2,277,767 + -1.4 2,278,002 - rsuA b2183 0.28 +0.9 2,278,018 - rsuA b2183 0.30 +0.7 2,278,126 - rsuA b2183 0.45 -0.2 2,278,173 + rsuA b2183 0.52 +1.4 2,278,266 - rsuA b2183 0.66 +0.1 2,278,285 - rsuA b2183 0.68 +0.8 2,278,462 - +0.1 2,278,560 - -0.3 2,278,678 - +0.9 2,278,720 + -0.7 2,278,720 + -0.6 2,278,785 + +0.2 2,278,785 + +1.4 2,278,824 + +0.2 2,278,824 + +1.3 2,278,834 - yejH b2184 0.10 +0.5 2,278,845 + yejH b2184 0.11 +0.2 2,278,897 + yejH b2184 0.14 -0.2 2,279,324 - yejH b2184 0.38 +0.7 2,279,324 - yejH b2184 0.38 +1.2 2,279,480 + yejH b2184 0.47 -0.6
Or see this region's nucleotide sequence