Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynjC and ynjD overlap by 1 nucleotides ynjD and b1757 are separated by 66 nucleotides b1757 and b1758 are separated by 8 nucleotides b1758 and nudG are separated by 86 nucleotides
b1755: ynjC - fused transporter subunits of ABC superfamily: membrane components (RefSeq), at 1,835,236 to 1,836,771
ynjC
b1756: ynjD - predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI), at 1,836,771 to 1,837,424
ynjD
b1757: b1757 - putative thiosulfate sulfur transferase (VIMSS), at 1,837,491 to 1,838,798
b1757
b1758: b1758 - putative cytochrome oxidase (VIMSS), at 1,838,807 to 1,839,427
b1758
b1759: nudG - pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase (NCBI), at 1,839,514 to 1,839,921
nudG
Position (kb)
1837
1838
1839 Strain fitness (log2 ratio)
-1
0
1 at 1836.584 kb on - strand, within ynjC at 1836.773 kb on - strand at 1836.840 kb on - strand, within ynjD at 1837.048 kb on - strand, within ynjD at 1837.083 kb on + strand, within ynjD at 1837.152 kb on + strand, within ynjD at 1837.203 kb on - strand, within ynjD at 1837.203 kb on - strand, within ynjD at 1837.248 kb on + strand, within ynjD at 1837.272 kb on - strand, within ynjD at 1837.793 kb on + strand, within b1757 at 1837.793 kb on + strand, within b1757 at 1838.008 kb on - strand, within b1757 at 1838.022 kb on + strand, within b1757 at 1838.065 kb on - strand, within b1757 at 1838.179 kb on + strand, within b1757 at 1838.194 kb on - strand, within b1757 at 1838.463 kb on + strand, within b1757 at 1838.563 kb on + strand, within b1757 at 1838.833 kb on + strand at 1838.833 kb on + strand at 1839.201 kb on + strand, within b1758 at 1839.552 kb on - strand at 1839.552 kb on - strand at 1839.760 kb on - strand, within nudG
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,836,584 - ynjC b1755 0.88 +0.1 1,836,773 - -0.1 1,836,840 - ynjD b1756 0.11 -0.3 1,837,048 - ynjD b1756 0.42 +0.6 1,837,083 + ynjD b1756 0.48 +0.2 1,837,152 + ynjD b1756 0.58 +0.3 1,837,203 - ynjD b1756 0.66 -1.7 1,837,203 - ynjD b1756 0.66 -1.1 1,837,248 + ynjD b1756 0.73 -1.1 1,837,272 - ynjD b1756 0.77 +0.8 1,837,793 + b1757 b1757 0.23 +0.5 1,837,793 + b1757 b1757 0.23 +0.1 1,838,008 - b1757 b1757 0.40 +1.1 1,838,022 + b1757 b1757 0.41 -0.6 1,838,065 - b1757 b1757 0.44 +0.6 1,838,179 + b1757 b1757 0.53 +0.8 1,838,194 - b1757 b1757 0.54 +1.2 1,838,463 + b1757 b1757 0.74 +0.2 1,838,563 + b1757 b1757 0.82 +1.2 1,838,833 + +0.8 1,838,833 + +1.4 1,839,201 + b1758 b1758 0.63 +0.6 1,839,552 - +0.2 1,839,552 - +0.8 1,839,760 - nudG b1759 0.60 +0.2
Or see this region's nucleotide sequence