Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybjT and ltaE are separated by 10 nucleotides ltaE and poxB are separated by 36 nucleotides
b0869: ybjT - putative dTDP-glucose enzyme (VIMSS), at 906,075 to 907,505
ybjT
b0870: ltaE - L-allo-threonine aldolase, PLP-dependent (NCBI), at 907,516 to 908,517
ltaE
b0871: poxB - pyruvate dehydrogenase (NCBI), at 908,554 to 910,272
poxB
Position (kb) 907
908
909 Strain fitness (log2 ratio) -1
0
1
2
3 at 906.527 kb on + strand, within ybjT at 906.527 kb on + strand, within ybjT at 906.635 kb on - strand, within ybjT at 906.667 kb on - strand, within ybjT at 906.667 kb on - strand, within ybjT at 906.865 kb on - strand, within ybjT at 907.084 kb on + strand, within ybjT at 907.090 kb on + strand, within ybjT at 907.090 kb on + strand, within ybjT at 907.271 kb on + strand, within ybjT at 907.385 kb on + strand at 907.462 kb on + strand at 907.473 kb on - strand at 908.109 kb on + strand, within ltaE at 908.179 kb on - strand, within ltaE at 908.192 kb on - strand, within ltaE at 908.220 kb on + strand, within ltaE at 908.235 kb on + strand, within ltaE at 908.314 kb on + strand, within ltaE at 908.337 kb on + strand, within ltaE at 908.403 kb on - strand, within ltaE at 908.461 kb on - strand at 908.493 kb on + strand at 908.493 kb on + strand at 908.513 kb on + strand at 908.626 kb on + strand at 908.626 kb on + strand at 908.794 kb on + strand, within poxB at 908.819 kb on + strand, within poxB at 908.939 kb on + strand, within poxB at 909.025 kb on - strand, within poxB at 909.025 kb on - strand, within poxB at 909.079 kb on - strand at 909.134 kb on + strand, within poxB at 909.142 kb on + strand, within poxB at 909.183 kb on + strand, within poxB at 909.183 kb on + strand, within poxB at 909.465 kb on - strand, within poxB at 909.465 kb on - strand, within poxB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 906,527 + ybjT b0869 0.32 -1.7 906,527 + ybjT b0869 0.32 -0.4 906,635 - ybjT b0869 0.39 +0.3 906,667 - ybjT b0869 0.41 +1.0 906,667 - ybjT b0869 0.41 +0.4 906,865 - ybjT b0869 0.55 -1.3 907,084 + ybjT b0869 0.71 +0.5 907,090 + ybjT b0869 0.71 +0.1 907,090 + ybjT b0869 0.71 +0.5 907,271 + ybjT b0869 0.84 +0.0 907,385 + +1.2 907,462 + +0.9 907,473 - -0.0 908,109 + ltaE b0870 0.59 +0.7 908,179 - ltaE b0870 0.66 +0.3 908,192 - ltaE b0870 0.67 -0.3 908,220 + ltaE b0870 0.70 +0.1 908,235 + ltaE b0870 0.72 -0.7 908,314 + ltaE b0870 0.80 +0.0 908,337 + ltaE b0870 0.82 +0.6 908,403 - ltaE b0870 0.89 +2.8 908,461 - +0.8 908,493 + -0.0 908,493 + +0.4 908,513 + +0.3 908,626 + +1.0 908,626 + +1.2 908,794 + poxB b0871 0.14 -1.7 908,819 + poxB b0871 0.15 +0.1 908,939 + poxB b0871 0.22 +0.4 909,025 - poxB b0871 0.27 +0.4 909,025 - poxB b0871 0.27 -0.6 909,079 - +0.4 909,134 + poxB b0871 0.34 -0.9 909,142 + poxB b0871 0.34 +0.4 909,183 + poxB b0871 0.37 +0.0 909,183 + poxB b0871 0.37 +1.0 909,465 - poxB b0871 0.53 +0.8 909,465 - poxB b0871 0.53 -0.7
Or see this region's nucleotide sequence