Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhO and ybhP overlap by 4 nucleotides ybhP and ybhQ are separated by 132 nucleotides ybhQ and ybhR overlap by 39 nucleotides
b0789: ybhO - cardiolipin synthase 2 (NCBI), at 821,721 to 822,962
ybhO
b0790: ybhP - predicted DNase (NCBI), at 822,959 to 823,720
ybhP
b0791: ybhQ - predicted inner membrane protein (NCBI), at 823,853 to 824,263
ybhQ
b0792: ybhR - predicted transporter subunit: membrane component of ABC superfamily (NCBI), at 824,225 to 825,331
ybhR
Position (kb) 822
823
824 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 822.100 kb on + strand, within ybhO at 822.100 kb on + strand, within ybhO at 822.155 kb on - strand, within ybhO at 822.188 kb on - strand, within ybhO at 822.188 kb on - strand, within ybhO at 822.273 kb on + strand, within ybhO at 822.328 kb on - strand, within ybhO at 822.328 kb on - strand, within ybhO at 822.553 kb on + strand, within ybhO at 822.553 kb on + strand, within ybhO at 822.780 kb on + strand, within ybhO at 822.780 kb on + strand, within ybhO at 822.849 kb on + strand at 822.891 kb on - strand at 823.224 kb on + strand, within ybhP at 823.224 kb on + strand, within ybhP at 823.296 kb on - strand, within ybhP at 823.296 kb on - strand, within ybhP at 823.302 kb on - strand, within ybhP at 823.331 kb on + strand, within ybhP at 823.346 kb on + strand, within ybhP at 823.405 kb on + strand, within ybhP at 823.434 kb on - strand, within ybhP at 823.454 kb on - strand, within ybhP at 823.604 kb on - strand, within ybhP at 823.653 kb on - strand at 823.850 kb on + strand at 823.893 kb on - strand at 823.947 kb on + strand, within ybhQ at 823.961 kb on - strand, within ybhQ at 823.993 kb on + strand, within ybhQ at 824.064 kb on - strand, within ybhQ at 824.068 kb on + strand, within ybhQ at 824.288 kb on - strand at 824.354 kb on + strand, within ybhR at 824.354 kb on + strand, within ybhR at 824.371 kb on - strand, within ybhR at 824.371 kb on - strand, within ybhR at 824.501 kb on + strand, within ybhR at 824.559 kb on + strand, within ybhR at 824.621 kb on - strand, within ybhR at 824.689 kb on - strand, within ybhR
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 822,100 + ybhO b0789 0.31 +0.2 822,100 + ybhO b0789 0.31 +0.1 822,155 - ybhO b0789 0.35 +0.8 822,188 - ybhO b0789 0.38 +1.0 822,188 - ybhO b0789 0.38 +1.0 822,273 + ybhO b0789 0.44 +0.7 822,328 - ybhO b0789 0.49 +0.2 822,328 - ybhO b0789 0.49 -0.3 822,553 + ybhO b0789 0.67 -0.1 822,553 + ybhO b0789 0.67 -0.8 822,780 + ybhO b0789 0.85 -1.4 822,780 + ybhO b0789 0.85 +0.2 822,849 + -0.1 822,891 - +0.4 823,224 + ybhP b0790 0.35 +0.5 823,224 + ybhP b0790 0.35 +0.3 823,296 - ybhP b0790 0.44 +0.5 823,296 - ybhP b0790 0.44 +0.1 823,302 - ybhP b0790 0.45 +1.1 823,331 + ybhP b0790 0.49 +1.2 823,346 + ybhP b0790 0.51 +0.5 823,405 + ybhP b0790 0.59 -0.2 823,434 - ybhP b0790 0.62 +0.3 823,454 - ybhP b0790 0.65 +0.5 823,604 - ybhP b0790 0.85 +0.6 823,653 - +0.5 823,850 + +0.5 823,893 - +1.3 823,947 + ybhQ b0791 0.23 -0.5 823,961 - ybhQ b0791 0.26 -0.5 823,993 + ybhQ b0791 0.34 +0.9 824,064 - ybhQ b0791 0.51 -0.2 824,068 + ybhQ b0791 0.52 -1.0 824,288 - -0.4 824,354 + ybhR b0792 0.12 -1.0 824,354 + ybhR b0792 0.12 +1.1 824,371 - ybhR b0792 0.13 +0.1 824,371 - ybhR b0792 0.13 -0.4 824,501 + ybhR b0792 0.25 +0.3 824,559 + ybhR b0792 0.30 -3.1 824,621 - ybhR b0792 0.36 -0.2 824,689 - ybhR b0792 0.42 +0.6
Or see this region's nucleotide sequence