Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybgI and ybgJ are separated by 22 nucleotides ybgJ and ybgK overlap by 7 nucleotides ybgK and ybgL overlap by 11 nucleotides
b0710: ybgI - conserved metal-binding protein (NCBI), at 742,050 to 742,793
ybgI
b0711: ybgJ - predicted enzyme subunit (NCBI), at 742,816 to 743,472
ybgJ
b0712: ybgK - predicted enzyme subunit (NCBI), at 743,466 to 744,398
ybgK
b0713: ybgL - hypothetical protein (NCBI), at 744,388 to 745,122
ybgL
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 741.831 kb on - strand at 741.987 kb on + strand at 742.010 kb on + strand at 742.010 kb on + strand at 742.019 kb on + strand at 742.126 kb on + strand, within ybgI at 742.191 kb on - strand, within ybgI at 742.191 kb on - strand, within ybgI at 742.292 kb on - strand, within ybgI at 742.357 kb on + strand, within ybgI at 742.357 kb on + strand, within ybgI at 742.438 kb on + strand, within ybgI at 742.541 kb on + strand, within ybgI at 742.541 kb on + strand, within ybgI at 742.615 kb on + strand, within ybgI at 742.699 kb on - strand, within ybgI at 742.753 kb on + strand at 742.761 kb on - strand at 742.761 kb on - strand at 742.973 kb on - strand, within ybgJ at 743.091 kb on + strand, within ybgJ at 743.091 kb on + strand, within ybgJ at 743.091 kb on + strand, within ybgJ at 743.185 kb on - strand, within ybgJ at 743.185 kb on - strand, within ybgJ at 743.185 kb on - strand, within ybgJ at 743.248 kb on - strand, within ybgJ at 743.250 kb on + strand, within ybgJ at 743.250 kb on + strand, within ybgJ at 743.302 kb on + strand, within ybgJ at 743.369 kb on + strand, within ybgJ at 743.374 kb on + strand, within ybgJ at 743.461 kb on + strand at 743.489 kb on + strand at 743.492 kb on + strand at 743.492 kb on + strand at 743.492 kb on + strand at 743.500 kb on - strand at 743.500 kb on - strand at 743.504 kb on + strand at 743.515 kb on - strand at 743.538 kb on + strand at 743.538 kb on + strand at 743.539 kb on + strand at 743.539 kb on + strand at 743.595 kb on - strand, within ybgK at 743.595 kb on - strand, within ybgK at 743.642 kb on + strand, within ybgK at 743.799 kb on + strand, within ybgK at 743.865 kb on - strand, within ybgK at 743.880 kb on + strand, within ybgK at 743.880 kb on + strand, within ybgK at 743.888 kb on - strand, within ybgK at 743.920 kb on - strand, within ybgK at 743.946 kb on - strand, within ybgK at 743.956 kb on + strand, within ybgK at 743.956 kb on + strand, within ybgK at 744.039 kb on + strand, within ybgK at 744.039 kb on + strand, within ybgK at 744.080 kb on + strand, within ybgK at 744.080 kb on + strand, within ybgK at 744.152 kb on + strand, within ybgK at 744.271 kb on - strand, within ybgK at 744.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 741,831 - -0.5 741,987 + -0.6 742,010 + +0.2 742,010 + +2.1 742,019 + -1.0 742,126 + ybgI b0710 0.10 +1.6 742,191 - ybgI b0710 0.19 +0.9 742,191 - ybgI b0710 0.19 +0.6 742,292 - ybgI b0710 0.33 -0.2 742,357 + ybgI b0710 0.41 -1.3 742,357 + ybgI b0710 0.41 +2.1 742,438 + ybgI b0710 0.52 -0.3 742,541 + ybgI b0710 0.66 -1.3 742,541 + ybgI b0710 0.66 -3.1 742,615 + ybgI b0710 0.76 -0.7 742,699 - ybgI b0710 0.87 +1.1 742,753 + -0.2 742,761 - +0.8 742,761 - +0.7 742,973 - ybgJ b0711 0.24 -0.1 743,091 + ybgJ b0711 0.42 +0.3 743,091 + ybgJ b0711 0.42 +0.6 743,091 + ybgJ b0711 0.42 -1.1 743,185 - ybgJ b0711 0.56 -0.5 743,185 - ybgJ b0711 0.56 +1.6 743,185 - ybgJ b0711 0.56 +1.1 743,248 - ybgJ b0711 0.66 +0.3 743,250 + ybgJ b0711 0.66 +0.1 743,250 + ybgJ b0711 0.66 +0.2 743,302 + ybgJ b0711 0.74 +1.0 743,369 + ybgJ b0711 0.84 +0.3 743,374 + ybgJ b0711 0.85 -0.2 743,461 + +0.3 743,489 + +0.7 743,492 + -0.0 743,492 + +0.7 743,492 + +0.4 743,500 - -1.2 743,500 - -1.3 743,504 + +0.7 743,515 - -0.4 743,538 + +1.3 743,538 + -0.1 743,539 + +0.2 743,539 + -0.5 743,595 - ybgK b0712 0.14 -0.8 743,595 - ybgK b0712 0.14 -1.7 743,642 + ybgK b0712 0.19 +0.6 743,799 + ybgK b0712 0.36 -0.0 743,865 - ybgK b0712 0.43 -0.4 743,880 + ybgK b0712 0.44 -0.0 743,880 + ybgK b0712 0.44 +0.2 743,888 - ybgK b0712 0.45 +0.8 743,920 - ybgK b0712 0.49 -0.4 743,946 - ybgK b0712 0.51 +0.1 743,956 + ybgK b0712 0.53 +2.2 743,956 + ybgK b0712 0.53 -2.1 744,039 + ybgK b0712 0.61 -1.1 744,039 + ybgK b0712 0.61 +0.7 744,080 + ybgK b0712 0.66 +0.5 744,080 + ybgK b0712 0.66 +0.6 744,152 + ybgK b0712 0.74 -0.4 744,271 - ybgK b0712 0.86 +0.0 744,423 - -0.8
Or see this region's nucleotide sequence