Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ykgF and ykgG overlap by 8 nucleotides ykgG and ykgH are separated by 242 nucleotides
b0307: ykgF - predicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain (NCBI), at 321,562 to 322,989
ykgF
b0308: ykgG - putative transporter (VIMSS), at 322,982 to 323,677
ykgG
b0310: ykgH - predicted inner membrane protein (NCBI), at 323,920 to 324,588
ykgH
Position (kb) 322
323
324 Strain fitness (log2 ratio) -2
-1
0
1
2 at 322.013 kb on + strand, within ykgF at 322.028 kb on + strand, within ykgF at 322.028 kb on + strand, within ykgF at 322.034 kb on + strand, within ykgF at 322.075 kb on + strand, within ykgF at 322.081 kb on + strand, within ykgF at 322.154 kb on + strand, within ykgF at 322.239 kb on + strand, within ykgF at 322.477 kb on - strand, within ykgF at 322.516 kb on + strand, within ykgF at 322.516 kb on + strand, within ykgF at 322.560 kb on - strand, within ykgF at 322.641 kb on + strand, within ykgF at 322.660 kb on + strand, within ykgF at 323.074 kb on + strand, within ykgG at 323.074 kb on + strand, within ykgG at 323.094 kb on + strand, within ykgG at 323.105 kb on + strand, within ykgG at 323.168 kb on + strand, within ykgG at 323.237 kb on + strand, within ykgG at 323.307 kb on - strand, within ykgG at 323.346 kb on - strand, within ykgG at 323.346 kb on - strand, within ykgG at 323.359 kb on + strand, within ykgG at 323.359 kb on + strand, within ykgG at 323.500 kb on + strand, within ykgG at 323.503 kb on + strand, within ykgG at 323.583 kb on - strand, within ykgG at 323.612 kb on - strand at 323.614 kb on + strand at 323.614 kb on + strand at 323.621 kb on - strand at 323.623 kb on + strand at 323.623 kb on + strand at 323.623 kb on + strand at 323.628 kb on + strand at 323.628 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.630 kb on + strand at 323.651 kb on + strand at 323.690 kb on + strand at 323.696 kb on + strand at 323.698 kb on - strand at 323.701 kb on + strand at 323.701 kb on + strand at 323.712 kb on + strand at 323.712 kb on + strand at 323.712 kb on + strand at 323.712 kb on + strand at 323.742 kb on + strand at 323.748 kb on + strand at 323.748 kb on + strand at 323.748 kb on + strand at 323.749 kb on + strand at 323.757 kb on + strand at 323.757 kb on + strand at 323.759 kb on + strand at 323.759 kb on + strand at 323.759 kb on + strand at 323.874 kb on + strand at 323.874 kb on + strand at 323.889 kb on + strand at 323.892 kb on - strand at 323.892 kb on - strand at 323.892 kb on - strand at 323.892 kb on - strand at 324.068 kb on - strand, within ykgH at 324.068 kb on - strand, within ykgH at 324.070 kb on - strand, within ykgH at 324.088 kb on - strand, within ykgH at 324.248 kb on - strand, within ykgH at 324.636 kb on - strand at 324.648 kb on - strand at 324.648 kb on - strand at 324.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 322,013 + ykgF b0307 0.32 +0.7 322,028 + ykgF b0307 0.33 +0.7 322,028 + ykgF b0307 0.33 +1.4 322,034 + ykgF b0307 0.33 +0.5 322,075 + ykgF b0307 0.36 +0.6 322,081 + ykgF b0307 0.36 -0.4 322,154 + ykgF b0307 0.41 +0.5 322,239 + ykgF b0307 0.47 +0.3 322,477 - ykgF b0307 0.64 -0.3 322,516 + ykgF b0307 0.67 -1.7 322,516 + ykgF b0307 0.67 -0.7 322,560 - ykgF b0307 0.70 -0.6 322,641 + ykgF b0307 0.76 -1.9 322,660 + ykgF b0307 0.77 -0.1 323,074 + ykgG b0308 0.13 +0.7 323,074 + ykgG b0308 0.13 +0.7 323,094 + ykgG b0308 0.16 +0.9 323,105 + ykgG b0308 0.18 -0.4 323,168 + ykgG b0308 0.27 -0.6 323,237 + ykgG b0308 0.37 -0.9 323,307 - ykgG b0308 0.47 -0.9 323,346 - ykgG b0308 0.52 -0.6 323,346 - ykgG b0308 0.52 -2.0 323,359 + ykgG b0308 0.54 -0.5 323,359 + ykgG b0308 0.54 -1.1 323,500 + ykgG b0308 0.74 -0.2 323,503 + ykgG b0308 0.75 -0.3 323,583 - ykgG b0308 0.86 -1.8 323,612 - -1.0 323,614 + +0.5 323,614 + +0.3 323,621 - -0.2 323,623 + -0.6 323,623 + +0.1 323,623 + +1.0 323,628 + +0.4 323,628 + -0.1 323,630 + -0.7 323,630 + +0.3 323,630 + -2.0 323,630 + +0.1 323,630 + +0.1 323,630 + +0.6 323,630 + -0.1 323,651 + +0.1 323,690 + +0.1 323,696 + +0.1 323,698 - -1.7 323,701 + +0.3 323,701 + -0.2 323,712 + +0.0 323,712 + +0.6 323,712 + -1.3 323,712 + +0.5 323,742 + +1.0 323,748 + -1.0 323,748 + +0.5 323,748 + +0.6 323,749 + -0.0 323,757 + +0.5 323,757 + +0.3 323,759 + +0.4 323,759 + +0.3 323,759 + -0.2 323,874 + +0.4 323,874 + +0.2 323,889 + +1.7 323,892 - -0.2 323,892 - -0.9 323,892 - -1.3 323,892 - +0.6 324,068 - ykgH b0310 0.22 +0.8 324,068 - ykgH b0310 0.22 -0.5 324,070 - ykgH b0310 0.22 -0.1 324,088 - ykgH b0310 0.25 -1.1 324,248 - ykgH b0310 0.49 -1.0 324,636 - -0.3 324,648 - +2.1 324,648 - +1.3 324,648 - -0.2
Or see this region's nucleotide sequence