Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS20800

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
2,835,470	+		RPSI07_RS20795	0.24	-0.5
2,835,471	-		RPSI07_RS20795	0.25	-0.1
2,835,471	-		RPSI07_RS20795	0.25	+1.6
2,835,471	-		RPSI07_RS20795	0.25	+0.4
2,835,572	+		RPSI07_RS20795	0.34	+1.3
2,835,572	+		RPSI07_RS20795	0.34	-1.4
2,835,573	-		RPSI07_RS20795	0.34	+0.4
2,835,697	-		RPSI07_RS20795	0.46	-0.2
2,835,710	+		RPSI07_RS20795	0.48	+0.1
2,835,710	+		RPSI07_RS20795	0.48	-0.5
2,835,710	+		RPSI07_RS20795	0.48	+1.2
2,835,711	-		RPSI07_RS20795	0.48	+0.5
2,835,711	-		RPSI07_RS20795	0.48	+1.6
2,835,711	-		RPSI07_RS20795	0.48	+0.7
2,835,712	+		RPSI07_RS20795	0.48	+0.0
2,835,713	-		RPSI07_RS20795	0.48	+0.4
2,835,713	-		RPSI07_RS20795	0.48	-0.1
2,835,713	-		RPSI07_RS20795	0.48	-0.8
2,835,869	+		RPSI07_RS20795	0.63	+0.2
2,835,869	+		RPSI07_RS20795	0.63	+1.3
2,835,869	+		RPSI07_RS20795	0.63	-0.2
2,835,869	+		RPSI07_RS20795	0.63	+0.7
2,836,019	+		RPSI07_RS20795	0.78	-0.6
2,836,019	+		RPSI07_RS20795	0.78	+2.7
2,836,019	+		RPSI07_RS20795	0.78	-0.3
2,836,019	+		RPSI07_RS20795	0.78	+1.1
2,836,019	+		RPSI07_RS20795	0.78	-0.5
2,836,020	-		RPSI07_RS20795	0.78	-1.0
2,836,020	-		RPSI07_RS20795	0.78	-0.3
2,836,020	-		RPSI07_RS20795	0.78	+2.5
2,836,020	-		RPSI07_RS20795	0.78	-1.3
2,836,020	-		RPSI07_RS20795	0.78	+0.3
2,836,020	-		RPSI07_RS20795	0.78	+0.6
2,836,020	-		RPSI07_RS20795	0.78	+0.8
2,836,022	-		RPSI07_RS20795	0.78	+0.2
2,836,115	+		RPSI07_RS20795	0.87	-0.7
2,836,115	+		RPSI07_RS20795	0.87	+1.5
2,836,116	-		RPSI07_RS20795	0.87	-0.3
2,836,116	-		RPSI07_RS20795	0.87	-0.4
2,836,116	-		RPSI07_RS20795	0.87	-0.7
2,836,116	-		RPSI07_RS20795	0.87	+0.3
2,836,116	-		RPSI07_RS20795	0.87	-0.3
2,836,146	+				-1.2
2,836,147	-				-0.7
2,836,167	+				+1.7
2,836,304	+				-0.6
2,836,304	+				-0.6
2,836,304	+				-0.8
2,836,305	-				-0.1
2,836,305	-				-1.3
2,836,305	-				-0.4
2,836,305	-				+0.1
2,836,334	+				-0.2
2,836,335	-				-1.8
2,836,335	-				+0.2
2,836,335	-				+0.1
2,836,335	-				+0.0
2,836,335	-				-0.5
2,836,335	-				-1.4
2,836,492	+		RPSI07_RS20800	0.31	-1.5
2,836,493	-		RPSI07_RS20800	0.31	+0.8
2,836,493	-		RPSI07_RS20800	0.31	-0.4
2,836,508	+		RPSI07_RS20800	0.33	-0.2
2,836,509	-		RPSI07_RS20800	0.33	+1.3
2,836,515	+		RPSI07_RS20800	0.34	+1.2
2,836,515	+		RPSI07_RS20800	0.34	-1.2
2,836,516	-		RPSI07_RS20800	0.34	-0.5
2,836,516	-		RPSI07_RS20800	0.34	-0.2
2,836,516	-		RPSI07_RS20800	0.34	-0.2
2,836,599	+		RPSI07_RS20800	0.46	-1.1
2,836,600	-		RPSI07_RS20800	0.46	-0.8
2,836,623	-		RPSI07_RS20800	0.49	+0.3
2,836,623	-		RPSI07_RS20800	0.49	+0.9
2,836,676	-		RPSI07_RS20800	0.57	-0.3
2,836,676	-		RPSI07_RS20800	0.57	+0.1
2,836,767	-		RPSI07_RS20800	0.70	+0.1
2,836,875	-		RPSI07_RS20800	0.86	+0.8
2,836,875	-		RPSI07_RS20800	0.86	-0.1
2,836,875	-		RPSI07_RS20800	0.86	-0.4
2,836,937	+				-0.4
2,836,938	-				-0.9
2,836,938	-				-1.2
2,837,023	+				-0.2
2,837,023	+				-1.3
2,837,024	-				+0.1
2,837,024	-				+1.8
2,837,048	+				-0.0
2,837,048	+				-0.3
2,837,049	-				+0.7
2,837,049	-				+1.6
2,837,049	-				+0.2
2,837,065	+				+0.0
2,837,147	+				+0.3
2,837,147	+				-0.2
2,837,164	+				-0.5
2,837,164	+				+0.9
2,837,164	+				-1.5
2,837,164	+				+0.3
2,837,165	-				-1.0
2,837,170	+				+0.1
2,837,171	-				+0.3
2,837,270	-		RPSI07_RS20805	0.16	+0.5
2,837,270	-		RPSI07_RS20805	0.16	+0.7
2,837,290	+		RPSI07_RS20805	0.17	+0.4
2,837,335	+		RPSI07_RS20805	0.20	-0.7
2,837,335	+		RPSI07_RS20805	0.20	+0.2
2,837,357	-		RPSI07_RS20805	0.21	+0.1
2,837,368	-		RPSI07_RS20805	0.22	+0.0
2,837,526	+		RPSI07_RS20805	0.32	-0.8
2,837,527	-		RPSI07_RS20805	0.32	-0.6
2,837,527	-		RPSI07_RS20805	0.32	-0.1
2,837,528	-		RPSI07_RS20805	0.32	+1.8
2,837,536	+		RPSI07_RS20805	0.32	-0.3
2,837,536	+		RPSI07_RS20805	0.32	-0.2
2,837,536	+		RPSI07_RS20805	0.32	+0.6
2,837,537	-		RPSI07_RS20805	0.33	+1.4
2,837,537	-		RPSI07_RS20805	0.33	+1.0
2,837,608	+		RPSI07_RS20805	0.37	-0.2
2,837,608	+		RPSI07_RS20805	0.37	-0.3
2,837,608	+		RPSI07_RS20805	0.37	+1.3
2,837,608	+		RPSI07_RS20805	0.37	-0.4
2,837,608	+		RPSI07_RS20805	0.37	+0.8
2,837,608	+		RPSI07_RS20805	0.37	+0.1
2,837,608	+		RPSI07_RS20805	0.37	+0.1
2,837,608	+		RPSI07_RS20805	0.37	+0.3
2,837,609	-		RPSI07_RS20805	0.37	-2.6
2,837,609	-		RPSI07_RS20805	0.37	-0.7
2,837,655	-		RPSI07_RS20805	0.40	-0.9
2,837,665	+		RPSI07_RS20805	0.41	-0.4
2,837,665	+		RPSI07_RS20805	0.41	+1.2
2,837,665	+		RPSI07_RS20805	0.41	+0.6
2,837,666	-		RPSI07_RS20805	0.41	-4.0
2,837,910	+		RPSI07_RS20805	0.56	-0.6
2,837,910	+		RPSI07_RS20805	0.56	+0.8
2,837,910	+		RPSI07_RS20805	0.56	-0.4
2,837,911	-		RPSI07_RS20805	0.56	+1.2
2,837,911	-		RPSI07_RS20805	0.56	-1.4
2,837,917	+		RPSI07_RS20805	0.57	+1.4
2,837,918	-		RPSI07_RS20805	0.57	-1.6
2,837,918	-		RPSI07_RS20805	0.57	+0.2
2,837,947	+		RPSI07_RS20805	0.58	-0.4
2,837,947	+		RPSI07_RS20805	0.58	-0.2
2,837,947	+		RPSI07_RS20805	0.58	+0.2
2,837,947	+		RPSI07_RS20805	0.58	+0.1
2,837,947	+		RPSI07_RS20805	0.58	-1.3
2,837,948	-		RPSI07_RS20805	0.58	+0.8
2,837,948	-		RPSI07_RS20805	0.58	-0.9
2,837,948	-		RPSI07_RS20805	0.58	+0.1