Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS10305 and RPSI07_RS10310 are separated by 153 nucleotides RPSI07_RS10310 and RPSI07_RS10315 are separated by 263 nucleotides
RPSI07_RS10305: RPSI07_RS10305 - deoxyguanosinetriphosphate triphosphohydrolase, at 518,272 to 519,435
_RS10305
RPSI07_RS10310: RPSI07_RS10310 - OmpW family protein, at 519,589 to 520,263
_RS10310
RPSI07_RS10315: RPSI07_RS10315 - transposase, at 520,527 to 521,252
_RS10315
Position (kb) 519
520
521 Strain fitness (log2 ratio) -2
-1
0
1
2 at 518.613 kb on + strand, within RPSI07_RS10305 at 518.894 kb on - strand, within RPSI07_RS10305 at 519.320 kb on - strand at 519.364 kb on + strand at 519.365 kb on - strand at 519.365 kb on - strand at 519.365 kb on - strand at 519.830 kb on + strand, within RPSI07_RS10310 at 519.851 kb on + strand, within RPSI07_RS10310 at 519.852 kb on - strand, within RPSI07_RS10310 at 520.025 kb on + strand, within RPSI07_RS10310 at 520.032 kb on + strand, within RPSI07_RS10310 at 520.062 kb on + strand, within RPSI07_RS10310 at 520.190 kb on + strand, within RPSI07_RS10310 at 520.190 kb on + strand, within RPSI07_RS10310 at 520.495 kb on - strand at 520.623 kb on + strand, within RPSI07_RS10315 at 520.623 kb on + strand, within RPSI07_RS10315 at 520.633 kb on - strand, within RPSI07_RS10315 at 520.640 kb on + strand, within RPSI07_RS10315 at 520.640 kb on + strand, within RPSI07_RS10315 at 520.751 kb on + strand, within RPSI07_RS10315 at 520.776 kb on + strand, within RPSI07_RS10315 at 520.778 kb on + strand, within RPSI07_RS10315 at 520.779 kb on - strand, within RPSI07_RS10315 at 520.779 kb on - strand, within RPSI07_RS10315 at 520.779 kb on - strand, within RPSI07_RS10315 at 520.779 kb on - strand, within RPSI07_RS10315 at 520.884 kb on + strand, within RPSI07_RS10315 at 520.885 kb on - strand, within RPSI07_RS10315 at 520.885 kb on - strand, within RPSI07_RS10315 at 520.885 kb on - strand, within RPSI07_RS10315 at 520.950 kb on + strand, within RPSI07_RS10315 at 520.950 kb on + strand, within RPSI07_RS10315 at 520.951 kb on - strand, within RPSI07_RS10315 at 520.951 kb on - strand at 520.951 kb on - strand, within RPSI07_RS10315 at 520.998 kb on + strand, within RPSI07_RS10315 at 521.005 kb on - strand, within RPSI07_RS10315 at 521.022 kb on - strand, within RPSI07_RS10315 at 521.107 kb on + strand, within RPSI07_RS10315 at 521.108 kb on - strand, within RPSI07_RS10315 at 521.108 kb on - strand, within RPSI07_RS10315 at 521.108 kb on - strand, within RPSI07_RS10315
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 518,613 + RPSI07_RS10305 0.29 -0.5 518,894 - RPSI07_RS10305 0.53 -0.5 519,320 - -2.3 519,364 + -0.9 519,365 - +0.9 519,365 - -0.3 519,365 - +1.0 519,830 + RPSI07_RS10310 0.36 +0.2 519,851 + RPSI07_RS10310 0.39 +0.2 519,852 - RPSI07_RS10310 0.39 +2.4 520,025 + RPSI07_RS10310 0.65 -1.0 520,032 + RPSI07_RS10310 0.66 +0.3 520,062 + RPSI07_RS10310 0.70 -1.7 520,190 + RPSI07_RS10310 0.89 -0.2 520,190 + RPSI07_RS10310 0.89 -0.7 520,495 - +0.1 520,623 + RPSI07_RS10315 0.13 -0.3 520,623 + RPSI07_RS10315 0.13 +0.4 520,633 - RPSI07_RS10315 0.15 -0.4 520,640 + RPSI07_RS10315 0.16 -1.0 520,640 + RPSI07_RS10315 0.16 -0.4 520,751 + RPSI07_RS10315 0.31 -1.0 520,776 + RPSI07_RS10315 0.34 +1.4 520,778 + RPSI07_RS10315 0.35 +0.4 520,779 - RPSI07_RS10315 0.35 -0.6 520,779 - RPSI07_RS10315 0.35 +0.6 520,779 - RPSI07_RS10315 0.35 -1.6 520,779 - RPSI07_RS10315 0.35 -1.7 520,884 + RPSI07_RS10315 0.49 -0.4 520,885 - RPSI07_RS10315 0.49 -0.8 520,885 - RPSI07_RS10315 0.49 -0.1 520,885 - RPSI07_RS10315 0.49 -0.8 520,950 + RPSI07_RS10315 0.58 +0.6 520,950 + RPSI07_RS10315 0.58 -0.3 520,951 - RPSI07_RS10315 0.58 -0.6 520,951 - +0.6 520,951 - RPSI07_RS10315 0.58 -0.7 520,998 + RPSI07_RS10315 0.65 +0.8 521,005 - RPSI07_RS10315 0.66 -1.3 521,022 - RPSI07_RS10315 0.68 +0.5 521,107 + RPSI07_RS10315 0.80 +0.9 521,108 - RPSI07_RS10315 0.80 -0.8 521,108 - RPSI07_RS10315 0.80 -0.6 521,108 - RPSI07_RS10315 0.80 +0.2
Or see this region's nucleotide sequence