Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS03035

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS03030 and RPSI07_RS03035 are separated by 185 nucleotidesRPSI07_RS03035 and RPSI07_RS03040 are separated by 30 nucleotidesRPSI07_RS03040 and RPSI07_RS03045 overlap by 1 nucleotides RPSI07_RS03030: RPSI07_RS03030 - type VI secretion system protein TssA, at 833,391 to 834,467 _RS03030 RPSI07_RS03035: RPSI07_RS03035 - DUF393 domain-containing protein, at 834,653 to 835,105 _RS03035 RPSI07_RS03040: RPSI07_RS03040 - hypothetical protein, at 835,136 to 836,020 _RS03040 RPSI07_RS03045: RPSI07_RS03045 - hypothetical protein, at 836,020 to 836,592 _RS03045 Position (kb) 834 835 836Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 833.682 kb on + strand, within RPSI07_RS03030at 833.683 kb on - strand, within RPSI07_RS03030at 833.712 kb on + strand, within RPSI07_RS03030at 833.713 kb on - strand, within RPSI07_RS03030at 833.850 kb on + strand, within RPSI07_RS03030at 833.850 kb on + strand, within RPSI07_RS03030at 833.850 kb on + strand, within RPSI07_RS03030at 833.850 kb on + strand, within RPSI07_RS03030at 833.850 kb on + strand, within RPSI07_RS03030at 833.851 kb on - strand, within RPSI07_RS03030at 833.851 kb on - strand, within RPSI07_RS03030at 833.851 kb on - strand, within RPSI07_RS03030at 833.851 kb on - strand, within RPSI07_RS03030at 833.985 kb on + strand, within RPSI07_RS03030at 833.985 kb on + strand, within RPSI07_RS03030at 833.985 kb on + strand, within RPSI07_RS03030at 833.985 kb on + strand, within RPSI07_RS03030at 833.986 kb on - strand, within RPSI07_RS03030at 833.986 kb on - strand, within RPSI07_RS03030at 833.987 kb on + strand, within RPSI07_RS03030at 833.987 kb on + strand, within RPSI07_RS03030at 833.988 kb on - strand, within RPSI07_RS03030at 833.988 kb on - strand, within RPSI07_RS03030at 833.997 kb on + strand, within RPSI07_RS03030at 833.997 kb on + strand, within RPSI07_RS03030at 833.997 kb on + strand, within RPSI07_RS03030at 833.998 kb on - strand, within RPSI07_RS03030at 834.327 kb on + strand, within RPSI07_RS03030at 834.327 kb on + strand, within RPSI07_RS03030at 834.327 kb on + strand, within RPSI07_RS03030at 834.328 kb on - strand, within RPSI07_RS03030at 834.517 kb on + strandat 834.556 kb on + strandat 834.556 kb on + strandat 834.556 kb on + strandat 834.556 kb on + strandat 834.556 kb on + strandat 834.557 kb on - strandat 834.557 kb on - strandat 834.577 kb on + strandat 834.626 kb on + strandat 834.627 kb on - strandat 834.747 kb on + strand, within RPSI07_RS03035at 834.873 kb on + strand, within RPSI07_RS03035at 834.873 kb on + strand, within RPSI07_RS03035at 834.873 kb on + strand, within RPSI07_RS03035at 834.874 kb on - strand, within RPSI07_RS03035at 834.874 kb on - strand, within RPSI07_RS03035at 834.909 kb on + strand, within RPSI07_RS03035at 834.910 kb on - strand, within RPSI07_RS03035at 834.917 kb on + strand, within RPSI07_RS03035at 834.917 kb on + strand, within RPSI07_RS03035at 834.925 kb on + strand, within RPSI07_RS03035at 834.926 kb on - strand, within RPSI07_RS03035at 834.926 kb on - strand, within RPSI07_RS03035at 835.203 kb on + strandat 835.203 kb on + strandat 835.204 kb on - strandat 835.398 kb on + strand, within RPSI07_RS03040at 835.398 kb on + strand, within RPSI07_RS03040at 835.398 kb on + strand, within RPSI07_RS03040at 835.398 kb on + strand, within RPSI07_RS03040at 835.399 kb on - strand, within RPSI07_RS03040at 835.399 kb on - strand, within RPSI07_RS03040at 835.411 kb on + strand, within RPSI07_RS03040at 835.411 kb on + strand, within RPSI07_RS03040at 835.412 kb on - strand, within RPSI07_RS03040at 835.412 kb on - strand, within RPSI07_RS03040at 835.419 kb on + strand, within RPSI07_RS03040at 835.419 kb on + strand, within RPSI07_RS03040at 835.419 kb on + strand, within RPSI07_RS03040at 835.419 kb on + strand, within RPSI07_RS03040at 835.420 kb on - strand, within RPSI07_RS03040at 835.420 kb on - strand, within RPSI07_RS03040at 835.420 kb on - strand, within RPSI07_RS03040at 835.422 kb on + strand, within RPSI07_RS03040at 835.422 kb on + strand, within RPSI07_RS03040at 835.423 kb on - strand, within RPSI07_RS03040at 835.423 kb on - strand, within RPSI07_RS03040at 835.423 kb on - strand, within RPSI07_RS03040at 835.423 kb on - strand, within RPSI07_RS03040at 835.467 kb on + strand, within RPSI07_RS03040at 835.467 kb on + strand, within RPSI07_RS03040at 835.467 kb on + strand, within RPSI07_RS03040at 835.467 kb on + strand, within RPSI07_RS03040at 835.467 kb on + strand, within RPSI07_RS03040at 835.467 kb on + strand, within RPSI07_RS03040at 835.467 kb on + strand, within RPSI07_RS03040at 835.467 kb on + strand, within RPSI07_RS03040at 835.467 kb on + strand, within RPSI07_RS03040at 835.468 kb on - strand, within RPSI07_RS03040at 835.468 kb on - strand, within RPSI07_RS03040at 835.468 kb on - strand, within RPSI07_RS03040at 835.468 kb on - strand, within RPSI07_RS03040at 835.468 kb on - strand, within RPSI07_RS03040at 835.468 kb on - strand, within RPSI07_RS03040at 835.468 kb on - strand, within RPSI07_RS03040at 835.468 kb on - strand, within RPSI07_RS03040at 835.482 kb on + strand, within RPSI07_RS03040at 835.692 kb on + strand, within RPSI07_RS03040at 835.692 kb on + strand, within RPSI07_RS03040at 835.693 kb on - strand, within RPSI07_RS03040at 835.775 kb on + strand, within RPSI07_RS03040at 835.776 kb on - strand, within RPSI07_RS03040at 835.776 kb on - strand, within RPSI07_RS03040at 835.776 kb on - strand, within RPSI07_RS03040at 835.800 kb on + strand, within RPSI07_RS03040at 835.800 kb on + strand, within RPSI07_RS03040at 835.800 kb on + strand, within RPSI07_RS03040at 835.800 kb on + strand, within RPSI07_RS03040at 835.801 kb on - strand, within RPSI07_RS03040at 835.801 kb on - strand, within RPSI07_RS03040at 835.801 kb on - strand, within RPSI07_RS03040at 835.801 kb on - strand, within RPSI07_RS03040at 835.852 kb on - strand, within RPSI07_RS03040at 835.854 kb on + strand, within RPSI07_RS03040at 835.858 kb on + strand, within RPSI07_RS03040at 835.859 kb on - strand, within RPSI07_RS03040at 835.860 kb on + strand, within RPSI07_RS03040at 835.861 kb on - strand, within RPSI07_RS03040at 835.861 kb on - strand, within RPSI07_RS03040at 835.878 kb on + strand, within RPSI07_RS03040at 835.878 kb on + strand, within RPSI07_RS03040at 835.879 kb on - strand, within RPSI07_RS03040at 835.879 kb on - strand, within RPSI07_RS03040at 835.879 kb on - strand, within RPSI07_RS03040at 835.880 kb on - strand, within RPSI07_RS03040at 835.902 kb on + strand, within RPSI07_RS03040at 835.902 kb on + strand, within RPSI07_RS03040at 835.902 kb on + strand, within RPSI07_RS03040at 835.902 kb on + strand, within RPSI07_RS03040at 835.903 kb on - strand, within RPSI07_RS03040at 835.903 kb on - strand, within RPSI07_RS03040at 835.903 kb on - strand, within RPSI07_RS03040at 835.903 kb on - strand, within RPSI07_RS03040at 836.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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833,682 + RPSI07_RS03030 0.27 +0.7
833,683 - RPSI07_RS03030 0.27 -0.2
833,712 + RPSI07_RS03030 0.30 +0.6
833,713 - RPSI07_RS03030 0.30 -0.3
833,850 + RPSI07_RS03030 0.43 +0.2
833,850 + RPSI07_RS03030 0.43 -1.1
833,850 + RPSI07_RS03030 0.43 +1.6
833,850 + RPSI07_RS03030 0.43 -0.7
833,850 + RPSI07_RS03030 0.43 +1.0
833,851 - RPSI07_RS03030 0.43 +0.2
833,851 - RPSI07_RS03030 0.43 +0.7
833,851 - RPSI07_RS03030 0.43 +0.4
833,851 - RPSI07_RS03030 0.43 +0.4
833,985 + RPSI07_RS03030 0.55 +0.4
833,985 + RPSI07_RS03030 0.55 -0.3
833,985 + RPSI07_RS03030 0.55 -0.7
833,985 + RPSI07_RS03030 0.55 -0.3
833,986 - RPSI07_RS03030 0.55 -1.1
833,986 - RPSI07_RS03030 0.55 +0.0
833,987 + RPSI07_RS03030 0.55 -0.4
833,987 + RPSI07_RS03030 0.55 -1.4
833,988 - RPSI07_RS03030 0.55 -0.1
833,988 - RPSI07_RS03030 0.55 -0.8
833,997 + RPSI07_RS03030 0.56 -1.4
833,997 + RPSI07_RS03030 0.56 -2.0
833,997 + RPSI07_RS03030 0.56 -0.6
833,998 - RPSI07_RS03030 0.56 +0.1
834,327 + RPSI07_RS03030 0.87 -0.6
834,327 + RPSI07_RS03030 0.87 -0.3
834,327 + RPSI07_RS03030 0.87 +0.2
834,328 - RPSI07_RS03030 0.87 -0.0
834,517 + -0.8
834,556 + +0.1
834,556 + +0.2
834,556 + +0.4
834,556 + +1.1
834,556 + +0.4
834,557 - +2.1
834,557 - +0.1
834,577 + -0.3
834,626 + -0.3
834,627 - -0.0
834,747 + RPSI07_RS03035 0.21 +0.7
834,873 + RPSI07_RS03035 0.49 +0.2
834,873 + RPSI07_RS03035 0.49 -0.9
834,873 + RPSI07_RS03035 0.49 -1.6
834,874 - RPSI07_RS03035 0.49 -1.1
834,874 - RPSI07_RS03035 0.49 -0.2
834,909 + RPSI07_RS03035 0.57 -1.1
834,910 - RPSI07_RS03035 0.57 -0.2
834,917 + RPSI07_RS03035 0.58 -0.1
834,917 + RPSI07_RS03035 0.58 -2.1
834,925 + RPSI07_RS03035 0.60 -1.2
834,926 - RPSI07_RS03035 0.60 -1.1
834,926 - RPSI07_RS03035 0.60 -1.2
835,203 + +1.3
835,203 + +1.1
835,204 - -0.1
835,398 + RPSI07_RS03040 0.30 +1.2
835,398 + RPSI07_RS03040 0.30 +0.5
835,398 + RPSI07_RS03040 0.30 +0.3
835,398 + RPSI07_RS03040 0.30 -0.1
835,399 - RPSI07_RS03040 0.30 -1.6
835,399 - RPSI07_RS03040 0.30 -0.2
835,411 + RPSI07_RS03040 0.31 -0.7
835,411 + RPSI07_RS03040 0.31 -0.9
835,412 - RPSI07_RS03040 0.31 +0.6
835,412 - RPSI07_RS03040 0.31 +0.0
835,419 + RPSI07_RS03040 0.32 -0.0
835,419 + RPSI07_RS03040 0.32 -1.7
835,419 + RPSI07_RS03040 0.32 -0.8
835,419 + RPSI07_RS03040 0.32 -2.6
835,420 - RPSI07_RS03040 0.32 -0.2
835,420 - RPSI07_RS03040 0.32 +0.3
835,420 - RPSI07_RS03040 0.32 -0.3
835,422 + RPSI07_RS03040 0.32 +0.1
835,422 + RPSI07_RS03040 0.32 +0.2
835,423 - RPSI07_RS03040 0.32 +0.4
835,423 - RPSI07_RS03040 0.32 -0.0
835,423 - RPSI07_RS03040 0.32 -1.6
835,423 - RPSI07_RS03040 0.32 -0.9
835,467 + RPSI07_RS03040 0.37 -0.0
835,467 + RPSI07_RS03040 0.37 -0.6
835,467 + RPSI07_RS03040 0.37 +0.2
835,467 + RPSI07_RS03040 0.37 -0.3
835,467 + RPSI07_RS03040 0.37 -1.6
835,467 + RPSI07_RS03040 0.37 -2.8
835,467 + RPSI07_RS03040 0.37 -1.1
835,467 + RPSI07_RS03040 0.37 -2.3
835,467 + RPSI07_RS03040 0.37 -0.4
835,468 - RPSI07_RS03040 0.38 +1.5
835,468 - RPSI07_RS03040 0.38 +0.4
835,468 - RPSI07_RS03040 0.38 -0.2
835,468 - RPSI07_RS03040 0.38 -0.9
835,468 - RPSI07_RS03040 0.38 +0.9
835,468 - RPSI07_RS03040 0.38 +0.5
835,468 - RPSI07_RS03040 0.38 +0.4
835,468 - RPSI07_RS03040 0.38 -0.4
835,482 + RPSI07_RS03040 0.39 -0.8
835,692 + RPSI07_RS03040 0.63 +0.2
835,692 + RPSI07_RS03040 0.63 +0.1
835,693 - RPSI07_RS03040 0.63 -0.5
835,775 + RPSI07_RS03040 0.72 -0.3
835,776 - RPSI07_RS03040 0.72 +0.3
835,776 - RPSI07_RS03040 0.72 +0.7
835,776 - RPSI07_RS03040 0.72 -0.3
835,800 + RPSI07_RS03040 0.75 +0.5
835,800 + RPSI07_RS03040 0.75 +0.6
835,800 + RPSI07_RS03040 0.75 +0.2
835,800 + RPSI07_RS03040 0.75 -0.5
835,801 - RPSI07_RS03040 0.75 +0.4
835,801 - RPSI07_RS03040 0.75 +0.9
835,801 - RPSI07_RS03040 0.75 +0.2
835,801 - RPSI07_RS03040 0.75 +0.4
835,852 - RPSI07_RS03040 0.81 -1.1
835,854 + RPSI07_RS03040 0.81 -0.4
835,858 + RPSI07_RS03040 0.82 +0.2
835,859 - RPSI07_RS03040 0.82 -0.2
835,860 + RPSI07_RS03040 0.82 -0.8
835,861 - RPSI07_RS03040 0.82 -0.1
835,861 - RPSI07_RS03040 0.82 +0.6
835,878 + RPSI07_RS03040 0.84 +0.4
835,878 + RPSI07_RS03040 0.84 +0.4
835,879 - RPSI07_RS03040 0.84 -0.8
835,879 - RPSI07_RS03040 0.84 +0.3
835,879 - RPSI07_RS03040 0.84 -0.8
835,880 - RPSI07_RS03040 0.84 -1.0
835,902 + RPSI07_RS03040 0.87 +0.6
835,902 + RPSI07_RS03040 0.87 +0.3
835,902 + RPSI07_RS03040 0.87 -0.1
835,902 + RPSI07_RS03040 0.87 +1.4
835,903 - RPSI07_RS03040 0.87 -0.4
835,903 - RPSI07_RS03040 0.87 -0.0
835,903 - RPSI07_RS03040 0.87 +0.1
835,903 - RPSI07_RS03040 0.87 +0.8
836,009 - -0.9

Or see this region's nucleotide sequence