Experiment: KB with Nalidixic 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4788 and Psyr_4789 are separated by 334 nucleotides Psyr_4789 and Psyr_4790 are separated by 27 nucleotides Psyr_4790 and Psyr_4791 are separated by 22 nucleotides
Psyr_4788: Psyr_4788 - lipoprotein, putative, at 5,676,236 to 5,676,562
_4788
Psyr_4789: Psyr_4789 - lipoprotein, putative, at 5,676,897 to 5,677,127
_4789
Psyr_4790: Psyr_4790 - phosphoglycerate kinase, at 5,677,155 to 5,678,318
_4790
Psyr_4791: Psyr_4791 - D-erythrose-4-phosphate dehydrogenase, at 5,678,341 to 5,679,384
_4791
Position (kb) 5677
5678
5679 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5676.192 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.194 kb on - strand at 5676.286 kb on - strand, within Psyr_4788 at 5676.286 kb on - strand, within Psyr_4788 at 5676.286 kb on - strand, within Psyr_4788 at 5676.337 kb on - strand, within Psyr_4788 at 5676.436 kb on - strand, within Psyr_4788 at 5676.564 kb on - strand at 5676.564 kb on - strand at 5676.727 kb on - strand at 5676.775 kb on - strand at 5676.775 kb on - strand at 5676.775 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.910 kb on - strand at 5676.971 kb on - strand, within Psyr_4789 at 5677.018 kb on - strand, within Psyr_4789 at 5677.018 kb on - strand, within Psyr_4789 at 5677.018 kb on - strand, within Psyr_4789 at 5677.018 kb on - strand, within Psyr_4789 at 5678.337 kb on - strand at 5678.843 kb on + strand, within Psyr_4791 at 5678.843 kb on + strand, within Psyr_4791 at 5678.844 kb on - strand, within Psyr_4791 at 5679.065 kb on + strand, within Psyr_4791
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 0.775 ug/ml remove 5,676,192 - +1.1 5,676,194 - -0.5 5,676,194 - -0.2 5,676,194 - -0.8 5,676,194 - +0.8 5,676,194 - -0.3 5,676,286 - Psyr_4788 0.15 -0.5 5,676,286 - Psyr_4788 0.15 +0.5 5,676,286 - Psyr_4788 0.15 +2.1 5,676,337 - Psyr_4788 0.31 -1.2 5,676,436 - Psyr_4788 0.61 -0.3 5,676,564 - +0.7 5,676,564 - -0.2 5,676,727 - +0.1 5,676,775 - -0.3 5,676,775 - +0.1 5,676,775 - +0.3 5,676,910 - +1.5 5,676,910 - +1.0 5,676,910 - -0.2 5,676,910 - +0.3 5,676,910 - -0.6 5,676,910 - -0.9 5,676,910 - +0.2 5,676,910 - +1.1 5,676,910 - -0.6 5,676,910 - +0.8 5,676,910 - +0.1 5,676,910 - +0.4 5,676,910 - +0.3 5,676,910 - -0.0 5,676,910 - -0.2 5,676,910 - -0.7 5,676,910 - +0.6 5,676,910 - +0.7 5,676,910 - +1.1 5,676,910 - +0.9 5,676,910 - -0.6 5,676,910 - -0.5 5,676,971 - Psyr_4789 0.32 -0.7 5,677,018 - Psyr_4789 0.52 -1.1 5,677,018 - Psyr_4789 0.52 -0.3 5,677,018 - Psyr_4789 0.52 +0.0 5,677,018 - Psyr_4789 0.52 -0.9 5,678,337 - +0.7 5,678,843 + Psyr_4791 0.48 -2.6 5,678,843 + Psyr_4791 0.48 -1.3 5,678,844 - Psyr_4791 0.48 -1.7 5,679,065 + Psyr_4791 0.69 -0.5
Or see this region's nucleotide sequence