Experiment: KB with Nalidixic 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3839 and Psyr_3840 are separated by 218 nucleotides Psyr_3840 and Psyr_3841 are separated by 100 nucleotides Psyr_3841 and Psyr_3842 are separated by 233 nucleotides
Psyr_3839: Psyr_3839 - type III helper protein HopAK1, at 4,574,582 to 4,576,213
_3839
Psyr_3840: Psyr_3840 - conserved hypothetical protein, at 4,576,432 to 4,576,590
_3840
Psyr_3841: Psyr_3841 - conserved hypothetical protein, at 4,576,691 to 4,577,032
_3841
Psyr_3842: Psyr_3842 - SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit, at 4,577,266 to 4,580,112
_3842
Position (kb) 4576
4577
4578 Strain fitness (log2 ratio) -1
0
1
2
3 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.713 kb on + strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.714 kb on - strand, within Psyr_3839 at 4575.755 kb on - strand, within Psyr_3839 at 4575.773 kb on + strand, within Psyr_3839 at 4575.774 kb on - strand, within Psyr_3839 at 4575.825 kb on - strand, within Psyr_3839 at 4575.825 kb on - strand, within Psyr_3839 at 4575.825 kb on - strand, within Psyr_3839 at 4575.995 kb on + strand, within Psyr_3839 at 4575.995 kb on + strand, within Psyr_3839 at 4575.996 kb on - strand, within Psyr_3839 at 4575.996 kb on - strand, within Psyr_3839 at 4575.996 kb on - strand, within Psyr_3839 at 4576.137 kb on - strand at 4576.176 kb on - strand at 4576.364 kb on - strand at 4576.393 kb on + strand at 4576.443 kb on + strand at 4576.504 kb on + strand, within Psyr_3840 at 4576.504 kb on + strand, within Psyr_3840 at 4576.504 kb on + strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.505 kb on - strand, within Psyr_3840 at 4576.540 kb on - strand, within Psyr_3840 at 4576.703 kb on - strand at 4576.804 kb on - strand, within Psyr_3841 at 4576.892 kb on - strand, within Psyr_3841 at 4576.892 kb on - strand, within Psyr_3841 at 4576.892 kb on - strand, within Psyr_3841 at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.020 kb on + strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.021 kb on - strand at 4577.110 kb on - strand at 4577.111 kb on + strand at 4577.111 kb on + strand at 4577.111 kb on + strand at 4577.111 kb on + strand at 4577.112 kb on - strand at 4577.112 kb on - strand at 4577.112 kb on - strand at 4577.112 kb on - strand at 4577.141 kb on + strand at 4577.141 kb on + strand at 4577.141 kb on + strand at 4577.142 kb on - strand at 4577.142 kb on - strand at 4577.142 kb on - strand at 4577.168 kb on - strand at 4577.234 kb on + strand at 4577.234 kb on + strand at 4577.234 kb on + strand at 4577.234 kb on + strand at 4577.234 kb on + strand at 4577.234 kb on + strand at 4577.234 kb on + strand at 4577.235 kb on - strand at 4577.235 kb on - strand at 4577.235 kb on - strand at 4577.278 kb on + strand at 4577.279 kb on - strand at 4577.302 kb on - strand at 4577.518 kb on + strand at 4577.518 kb on + strand at 4577.654 kb on - strand, within Psyr_3842 at 4577.811 kb on + strand, within Psyr_3842
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 0.775 ug/ml remove 4,575,713 + Psyr_3839 0.69 -1.2 4,575,713 + Psyr_3839 0.69 +0.0 4,575,713 + Psyr_3839 0.69 -0.6 4,575,713 + Psyr_3839 0.69 -1.4 4,575,713 + Psyr_3839 0.69 -0.4 4,575,713 + Psyr_3839 0.69 -0.4 4,575,713 + Psyr_3839 0.69 -0.2 4,575,714 - Psyr_3839 0.69 +0.2 4,575,714 - Psyr_3839 0.69 -0.4 4,575,714 - Psyr_3839 0.69 -1.3 4,575,714 - Psyr_3839 0.69 +0.1 4,575,714 - Psyr_3839 0.69 +0.6 4,575,714 - Psyr_3839 0.69 +0.0 4,575,714 - Psyr_3839 0.69 +0.1 4,575,714 - Psyr_3839 0.69 -1.1 4,575,714 - Psyr_3839 0.69 +0.6 4,575,755 - Psyr_3839 0.72 +0.8 4,575,773 + Psyr_3839 0.73 +0.9 4,575,774 - Psyr_3839 0.73 +1.1 4,575,825 - Psyr_3839 0.76 +2.9 4,575,825 - Psyr_3839 0.76 -0.1 4,575,825 - Psyr_3839 0.76 -0.7 4,575,995 + Psyr_3839 0.87 -0.4 4,575,995 + Psyr_3839 0.87 -0.4 4,575,996 - Psyr_3839 0.87 +0.5 4,575,996 - Psyr_3839 0.87 +1.2 4,575,996 - Psyr_3839 0.87 -0.4 4,576,137 - +0.3 4,576,176 - -1.6 4,576,364 - +0.9 4,576,393 + -1.7 4,576,443 + -0.3 4,576,504 + Psyr_3840 0.45 -0.1 4,576,504 + Psyr_3840 0.45 -0.9 4,576,504 + Psyr_3840 0.45 +0.1 4,576,505 - Psyr_3840 0.46 +0.9 4,576,505 - Psyr_3840 0.46 -0.2 4,576,505 - Psyr_3840 0.46 +0.5 4,576,505 - Psyr_3840 0.46 +0.1 4,576,505 - Psyr_3840 0.46 +0.1 4,576,540 - Psyr_3840 0.68 +0.0 4,576,703 - -0.4 4,576,804 - Psyr_3841 0.33 -1.2 4,576,892 - Psyr_3841 0.59 +1.3 4,576,892 - Psyr_3841 0.59 -0.2 4,576,892 - Psyr_3841 0.59 +0.1 4,577,020 + +1.1 4,577,020 + -0.2 4,577,020 + -0.1 4,577,021 - +1.0 4,577,021 - +2.5 4,577,021 - +0.4 4,577,021 - +0.9 4,577,021 - +0.6 4,577,021 - +0.3 4,577,110 - +0.5 4,577,111 + +0.5 4,577,111 + +0.1 4,577,111 + -0.7 4,577,111 + +1.1 4,577,112 - +0.3 4,577,112 - +0.5 4,577,112 - +0.2 4,577,112 - +0.3 4,577,141 + +1.2 4,577,141 + +1.3 4,577,141 + -0.3 4,577,142 - +0.2 4,577,142 - -1.7 4,577,142 - -1.0 4,577,168 - -0.9 4,577,234 + -0.1 4,577,234 + +1.0 4,577,234 + +1.1 4,577,234 + -0.4 4,577,234 + +0.5 4,577,234 + +0.7 4,577,234 + +0.0 4,577,235 - +0.9 4,577,235 - -0.4 4,577,235 - -0.6 4,577,278 + +1.0 4,577,279 - +0.6 4,577,302 - +0.5 4,577,518 + +0.9 4,577,518 + -0.2 4,577,654 - Psyr_3842 0.14 +1.2 4,577,811 + Psyr_3842 0.19 +0.6
Or see this region's nucleotide sequence