Experiment: KB with Nalidixic 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3552 and Psyr_3553 are separated by 325 nucleotides Psyr_3553 and Psyr_RNA54 are separated by 44 nucleotides Psyr_RNA54 and Psyr_RNA55 are separated by 87 nucleotides Psyr_RNA55 and Psyr_RNA56 are separated by 109 nucleotides Psyr_RNA56 and Psyr_3554 are separated by 62 nucleotides Psyr_3554 and Psyr_3555 are separated by 169 nucleotides
Psyr_3552: Psyr_3552 - Divalent cation transporter, at 4,230,613 to 4,232,055
_3552
Psyr_3553: Psyr_3553 - conserved hypothetical protein, at 4,232,381 to 4,232,872
_3553
Psyr_RNA54: Psyr_RNA54 - tRNA-Arg, at 4,232,917 to 4,232,993
_RNA54
Psyr_RNA55: Psyr_RNA55 - tRNA-Arg, at 4,233,081 to 4,233,157
_RNA55
Psyr_RNA56: Psyr_RNA56 - tRNA-Ser, at 4,233,267 to 4,233,357
_RNA56
Psyr_3554: Psyr_3554 - Carbon storage regulator, at 4,233,420 to 4,233,608
_3554
Psyr_3555: Psyr_3555 - aspartate kinase, at 4,233,778 to 4,235,010
_3555
Position (kb) 4232
4233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4231.845 kb on - strand, within Psyr_3552 at 4232.056 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.344 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.401 kb on - strand at 4232.401 kb on - strand at 4232.401 kb on - strand at 4232.492 kb on - strand, within Psyr_3553 at 4232.492 kb on - strand, within Psyr_3553 at 4232.596 kb on + strand, within Psyr_3553 at 4232.597 kb on - strand, within Psyr_3553 at 4232.597 kb on - strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.796 kb on - strand, within Psyr_3553 at 4232.801 kb on + strand, within Psyr_3553 at 4232.801 kb on + strand, within Psyr_3553 at 4232.801 kb on + strand, within Psyr_3553 at 4232.802 kb on - strand, within Psyr_3553 at 4232.802 kb on - strand, within Psyr_3553 at 4232.827 kb on + strand at 4232.828 kb on - strand at 4232.858 kb on - strand at 4232.870 kb on + strand at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.986 kb on - strand at 4233.050 kb on - strand at 4233.257 kb on - strand at 4233.257 kb on - strand at 4233.456 kb on - strand, within Psyr_3554 at 4233.513 kb on - strand, within Psyr_3554 at 4233.608 kb on + strand at 4233.608 kb on + strand at 4233.653 kb on + strand at 4233.653 kb on + strand at 4233.654 kb on - strand at 4233.654 kb on - strand at 4233.654 kb on - strand at 4233.654 kb on - strand at 4233.654 kb on - strand at 4233.654 kb on - strand at 4233.656 kb on - strand at 4233.694 kb on + strand at 4233.694 kb on + strand at 4233.694 kb on + strand at 4233.694 kb on + strand at 4233.694 kb on + strand at 4233.694 kb on + strand at 4233.694 kb on + strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.697 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 0.775 ug/ml remove 4,231,845 - Psyr_3552 0.85 +0.9 4,232,056 - +0.3 4,232,199 - -1.9 4,232,199 - -2.3 4,232,199 - -0.9 4,232,199 - -1.2 4,232,199 - +0.5 4,232,344 + +0.3 4,232,400 + +0.0 4,232,400 + +0.5 4,232,400 + +0.4 4,232,400 + -0.3 4,232,400 + -0.3 4,232,400 + -0.7 4,232,401 - -2.5 4,232,401 - -0.5 4,232,401 - -1.9 4,232,492 - Psyr_3553 0.23 -0.4 4,232,492 - Psyr_3553 0.23 -0.7 4,232,596 + Psyr_3553 0.44 +1.9 4,232,597 - Psyr_3553 0.44 -0.7 4,232,597 - Psyr_3553 0.44 +1.1 4,232,795 + Psyr_3553 0.84 +0.6 4,232,795 + Psyr_3553 0.84 +0.6 4,232,795 + Psyr_3553 0.84 +1.1 4,232,795 + Psyr_3553 0.84 +0.2 4,232,795 + Psyr_3553 0.84 -1.6 4,232,795 + Psyr_3553 0.84 -0.2 4,232,796 - Psyr_3553 0.84 -0.2 4,232,801 + Psyr_3553 0.85 -1.4 4,232,801 + Psyr_3553 0.85 +0.1 4,232,801 + Psyr_3553 0.85 +1.3 4,232,802 - Psyr_3553 0.86 -0.3 4,232,802 - Psyr_3553 0.86 -0.7 4,232,827 + +0.4 4,232,828 - +0.0 4,232,858 - -0.1 4,232,870 + +0.1 4,232,916 - +0.1 4,232,916 - -0.3 4,232,916 - +0.5 4,232,916 - -0.5 4,232,986 - -0.4 4,233,050 - -0.7 4,233,257 - +0.9 4,233,257 - +1.1 4,233,456 - Psyr_3554 0.19 -1.8 4,233,513 - Psyr_3554 0.49 +0.7 4,233,608 + +1.0 4,233,608 + -0.4 4,233,653 + -2.5 4,233,653 + -0.2 4,233,654 - -0.0 4,233,654 - +0.1 4,233,654 - +0.4 4,233,654 - -0.4 4,233,654 - +0.6 4,233,654 - +0.3 4,233,656 - +0.4 4,233,694 + +0.9 4,233,694 + +0.9 4,233,694 + +1.5 4,233,694 + +0.3 4,233,694 + +0.2 4,233,694 + +1.5 4,233,694 + +0.2 4,233,695 - -0.1 4,233,695 - -0.7 4,233,695 - +0.6 4,233,695 - -0.8 4,233,695 - -0.0 4,233,695 - -0.3 4,233,695 - -1.0 4,233,695 - +0.6 4,233,695 - -0.5 4,233,695 - +0.2 4,233,697 - -1.3
Or see this region's nucleotide sequence