Experiment: KB with Nalidixic 0.775 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3550 and Psyr_3551 are separated by 429 nucleotides Psyr_3551 and Psyr_3552 are separated by 186 nucleotides Psyr_3552 and Psyr_3553 are separated by 325 nucleotides Psyr_3553 and Psyr_RNA54 are separated by 44 nucleotides
Psyr_3550: Psyr_3550 - conserved hypothetical protein, at 4,229,485 to 4,229,670
_3550
Psyr_3551: Psyr_3551 - Arc-like DNA binding protein, at 4,230,100 to 4,230,426
_3551
Psyr_3552: Psyr_3552 - Divalent cation transporter, at 4,230,613 to 4,232,055
_3552
Psyr_3553: Psyr_3553 - conserved hypothetical protein, at 4,232,381 to 4,232,872
_3553
Psyr_RNA54: Psyr_RNA54 - tRNA-Arg, at 4,232,917 to 4,232,993
_RNA54
Position (kb) 4230
4231
4232
4233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4229.680 kb on + strand at 4229.681 kb on - strand at 4229.807 kb on - strand at 4229.807 kb on - strand at 4229.858 kb on + strand at 4229.977 kb on - strand at 4230.066 kb on - strand at 4230.066 kb on - strand at 4230.085 kb on + strand at 4230.097 kb on + strand at 4230.097 kb on + strand at 4230.098 kb on - strand at 4230.098 kb on - strand at 4230.099 kb on + strand at 4230.099 kb on + strand at 4230.100 kb on - strand at 4230.100 kb on - strand at 4230.120 kb on + strand at 4230.120 kb on + strand at 4230.121 kb on - strand at 4230.124 kb on + strand at 4230.124 kb on + strand at 4230.437 kb on - strand at 4230.502 kb on + strand at 4230.598 kb on + strand at 4230.615 kb on - strand at 4231.845 kb on - strand, within Psyr_3552 at 4232.056 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.199 kb on - strand at 4232.344 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.401 kb on - strand at 4232.401 kb on - strand at 4232.401 kb on - strand at 4232.492 kb on - strand, within Psyr_3553 at 4232.492 kb on - strand, within Psyr_3553 at 4232.596 kb on + strand, within Psyr_3553 at 4232.597 kb on - strand, within Psyr_3553 at 4232.597 kb on - strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.795 kb on + strand, within Psyr_3553 at 4232.796 kb on - strand, within Psyr_3553 at 4232.801 kb on + strand, within Psyr_3553 at 4232.801 kb on + strand, within Psyr_3553 at 4232.801 kb on + strand, within Psyr_3553 at 4232.802 kb on - strand, within Psyr_3553 at 4232.802 kb on - strand, within Psyr_3553 at 4232.827 kb on + strand at 4232.828 kb on - strand at 4232.858 kb on - strand at 4232.870 kb on + strand at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.986 kb on - strand at 4233.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 0.775 ug/ml remove 4,229,680 + -1.3 4,229,681 - -0.0 4,229,807 - -0.8 4,229,807 - +0.0 4,229,858 + +0.9 4,229,977 - -0.2 4,230,066 - -0.5 4,230,066 - +0.3 4,230,085 + -2.1 4,230,097 + -1.2 4,230,097 + -1.2 4,230,098 - -1.0 4,230,098 - -2.3 4,230,099 + +0.1 4,230,099 + -1.3 4,230,100 - -1.9 4,230,100 - -0.4 4,230,120 + -1.6 4,230,120 + -0.6 4,230,121 - -1.7 4,230,124 + -1.1 4,230,124 + -1.2 4,230,437 - -1.3 4,230,502 + +0.3 4,230,598 + +0.9 4,230,615 - -0.1 4,231,845 - Psyr_3552 0.85 +0.9 4,232,056 - +0.3 4,232,199 - -1.9 4,232,199 - -2.3 4,232,199 - -0.9 4,232,199 - -1.2 4,232,199 - +0.5 4,232,344 + +0.3 4,232,400 + +0.0 4,232,400 + +0.5 4,232,400 + +0.4 4,232,400 + -0.3 4,232,400 + -0.3 4,232,400 + -0.7 4,232,401 - -2.5 4,232,401 - -0.5 4,232,401 - -1.9 4,232,492 - Psyr_3553 0.23 -0.4 4,232,492 - Psyr_3553 0.23 -0.7 4,232,596 + Psyr_3553 0.44 +1.9 4,232,597 - Psyr_3553 0.44 -0.7 4,232,597 - Psyr_3553 0.44 +1.1 4,232,795 + Psyr_3553 0.84 +0.6 4,232,795 + Psyr_3553 0.84 +0.6 4,232,795 + Psyr_3553 0.84 +1.1 4,232,795 + Psyr_3553 0.84 +0.2 4,232,795 + Psyr_3553 0.84 -1.6 4,232,795 + Psyr_3553 0.84 -0.2 4,232,796 - Psyr_3553 0.84 -0.2 4,232,801 + Psyr_3553 0.85 -1.4 4,232,801 + Psyr_3553 0.85 +0.1 4,232,801 + Psyr_3553 0.85 +1.3 4,232,802 - Psyr_3553 0.86 -0.3 4,232,802 - Psyr_3553 0.86 -0.7 4,232,827 + +0.4 4,232,828 - +0.0 4,232,858 - -0.1 4,232,870 + +0.1 4,232,916 - +0.1 4,232,916 - -0.3 4,232,916 - +0.5 4,232,916 - -0.5 4,232,986 - -0.4 4,233,050 - -0.7
Or see this region's nucleotide sequence