Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1340

Experiment: KB with Nalidixic 0.775 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 0.775 ug/ml
1,517,171	+				-0.2
1,517,171	+				-0.3
1,517,172	-				+0.2
1,517,172	-				+1.0
1,517,172	-				-1.4
1,517,291	+		Psyr_1339	0.19	+2.0
1,517,292	-		Psyr_1339	0.19	+0.4
1,517,321	+		Psyr_1339	0.22	+0.3
1,517,340	+		Psyr_1339	0.25	+1.0
1,517,470	+		Psyr_1339	0.40	-0.0
1,517,470	+		Psyr_1339	0.40	-0.1
1,517,471	-		Psyr_1339	0.40	+0.2
1,517,471	-		Psyr_1339	0.40	+1.3
1,517,514	-		Psyr_1339	0.46	-0.0
1,517,525	-		Psyr_1339	0.47	+1.0
1,517,578	+		Psyr_1339	0.53	+1.0
1,517,659	+		Psyr_1339	0.63	+0.4
1,517,659	+		Psyr_1339	0.63	+0.5
1,517,659	+		Psyr_1339	0.63	-0.3
1,517,659	+		Psyr_1339	0.63	-0.0
1,517,659	+		Psyr_1339	0.63	-0.7
1,517,660	-		Psyr_1339	0.63	-1.1
1,517,660	-		Psyr_1339	0.63	-0.4
1,517,660	-		Psyr_1339	0.63	-0.7
1,517,660	-		Psyr_1339	0.63	+1.0
1,517,660	-		Psyr_1339	0.63	-0.6
1,517,763	-		Psyr_1339	0.75	-0.3
1,517,763	-		Psyr_1339	0.75	+3.1
1,517,835	-		Psyr_1339	0.84	+1.2
1,517,885	+				-0.5
1,517,939	-				-0.6
1,517,985	+				-0.0
1,517,986	-				-0.0
1,517,986	-				+1.0
1,518,060	+				-0.4
1,518,060	+				-0.1
1,518,060	+				+0.1
1,518,060	+				+0.1
1,518,060	+				+0.1
1,518,060	+				-0.6
1,518,060	+				+0.7
1,518,060	+				+2.6
1,518,060	+				+1.0
1,518,060	+				+0.2
1,518,060	+				-0.6
1,518,061	-				+1.0
1,518,061	-				-0.5
1,518,061	-				-2.6
1,518,061	-				+1.1
1,518,061	-				-0.2
1,518,061	-				+0.3
1,518,061	-				+0.3
1,518,116	-				+0.2
1,518,137	+				-0.3
1,518,137	+				-0.3
1,518,236	-		Psyr_1340	0.10	-0.3
1,518,246	+		Psyr_1340	0.11	-0.2
1,518,323	-		Psyr_1340	0.18	+1.3
1,518,323	-		Psyr_1340	0.18	+0.3
1,518,488	-		Psyr_1340	0.31	+0.7
1,518,488	-		Psyr_1340	0.31	+0.6
1,518,670	+		Psyr_1340	0.47	+1.3
1,518,670	+		Psyr_1340	0.47	+1.0
1,518,671	-		Psyr_1340	0.47	+0.1
1,518,682	+		Psyr_1340	0.48	+1.4
1,518,682	+		Psyr_1340	0.48	+0.6
1,518,682	+		Psyr_1340	0.48	+0.4
1,518,683	-		Psyr_1340	0.48	-0.0
1,518,877	+		Psyr_1340	0.64	+0.1
1,518,916	+		Psyr_1340	0.67	-0.3
1,518,916	+		Psyr_1340	0.67	-0.5
1,518,916	+		Psyr_1340	0.67	+1.2
1,518,916	+		Psyr_1340	0.67	-1.6
1,518,917	-		Psyr_1340	0.67	-1.0
1,518,917	-		Psyr_1340	0.67	+0.4
1,518,925	+		Psyr_1340	0.68	+0.6
1,518,926	-		Psyr_1340	0.68	-0.8
1,518,972	+		Psyr_1340	0.72	+1.0
1,519,023	+		Psyr_1340	0.76	+0.1
1,519,023	+		Psyr_1340	0.76	+1.0
1,519,023	+		Psyr_1340	0.76	+1.4
1,519,023	+		Psyr_1340	0.76	-0.4
1,519,023	+		Psyr_1340	0.76	+2.4
1,519,023	+		Psyr_1340	0.76	+0.6
1,519,023	+		Psyr_1340	0.76	+1.6
1,519,023	+		Psyr_1340	0.76	+0.5
1,519,023	+		Psyr_1340	0.76	+0.8
1,519,023	+		Psyr_1340	0.76	-1.2
1,519,024	-		Psyr_1340	0.76	-0.0
1,519,024	-		Psyr_1340	0.76	+1.0
1,519,024	-		Psyr_1340	0.76	+0.3
1,519,024	-		Psyr_1340	0.76	+0.3
1,519,024	-		Psyr_1340	0.76	+1.5
1,519,024	-		Psyr_1340	0.76	+0.0
1,519,024	-		Psyr_1340	0.76	-0.8
1,519,024	-		Psyr_1340	0.76	+1.1
1,519,346	+				-0.5
1,519,347	-				-0.0
1,519,356	+				+1.0
1,519,357	-				+0.3
1,519,362	+				-0.0
1,519,363	-				+2.6
1,519,363	-				+0.2
1,519,363	-				+1.2
1,519,813	+		Psyr_1341	0.17	-0.6
1,519,814	-		Psyr_1341	0.17	-0.3
1,519,814	-		Psyr_1341	0.17	-2.2
1,519,844	+		Psyr_1341	0.18	+1.0
1,519,847	+		Psyr_1341	0.18	-0.0
1,519,931	-		Psyr_1341	0.21	+1.0
1,520,068	+		Psyr_1341	0.26	+0.2
1,520,069	-		Psyr_1341	0.26	+0.6
1,520,227	+		Psyr_1341	0.32	+0.6
1,520,227	+		Psyr_1341	0.32	+0.1
1,520,227	+		Psyr_1341	0.32	-0.1