Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1281

Experiment: KB with Nalidixic 0.775 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1280 and Psyr_1281 are separated by 171 nucleotidesPsyr_1281 and Psyr_1282 are separated by 247 nucleotidesPsyr_1282 and Psyr_1283 are separated by 5 nucleotides Psyr_1280: Psyr_1280 - Cytochrome c assembly protein, at 1,446,323 to 1,447,177 _1280 Psyr_1281: Psyr_1281 - signal recognition particle subunit FFH/SRP54 (srp54), at 1,447,349 to 1,448,725 _1281 Psyr_1282: Psyr_1282 - SSU ribosomal protein S16P, at 1,448,973 to 1,449,230 _1282 Psyr_1283: Psyr_1283 - 16S rRNA processing protein RimM, at 1,449,236 to 1,449,775 _1283 Position (kb) 1447 1448 1449Strain fitness (log2 ratio) -2 -1 0 1at 1446.366 kb on + strandat 1446.367 kb on - strandat 1446.416 kb on - strand, within Psyr_1280at 1446.667 kb on - strand, within Psyr_1280at 1446.742 kb on + strand, within Psyr_1280at 1446.743 kb on - strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.812 kb on + strand, within Psyr_1280at 1446.813 kb on - strand, within Psyr_1280at 1446.813 kb on - strand, within Psyr_1280at 1446.828 kb on - strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.083 kb on + strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.084 kb on - strand, within Psyr_1280at 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.135 kb on + strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.136 kb on - strandat 1447.177 kb on + strandat 1447.177 kb on + strandat 1447.177 kb on + strandat 1447.177 kb on + strandat 1447.178 kb on - strandat 1447.178 kb on - strandat 1447.244 kb on + strandat 1448.723 kb on + strandat 1448.723 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 0.775 ug/ml
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1,446,366 + +1.6
1,446,367 - -0.0
1,446,416 - Psyr_1280 0.11 +1.2
1,446,667 - Psyr_1280 0.40 -0.5
1,446,742 + Psyr_1280 0.49 -0.9
1,446,743 - Psyr_1280 0.49 +0.5
1,446,812 + Psyr_1280 0.57 -1.4
1,446,812 + Psyr_1280 0.57 -0.8
1,446,812 + Psyr_1280 0.57 +0.3
1,446,812 + Psyr_1280 0.57 -0.0
1,446,813 - Psyr_1280 0.57 -0.2
1,446,813 - Psyr_1280 0.57 +0.0
1,446,828 - Psyr_1280 0.59 +0.3
1,447,083 + Psyr_1280 0.89 -0.1
1,447,083 + Psyr_1280 0.89 -0.5
1,447,083 + Psyr_1280 0.89 -1.1
1,447,083 + Psyr_1280 0.89 -1.8
1,447,084 - Psyr_1280 0.89 -1.0
1,447,084 - Psyr_1280 0.89 -1.8
1,447,084 - Psyr_1280 0.89 -1.5
1,447,135 + -2.4
1,447,135 + +0.5
1,447,135 + -0.4
1,447,135 + -0.0
1,447,135 + +0.6
1,447,135 + -0.0
1,447,135 + +0.1
1,447,136 - -1.5
1,447,136 - -0.8
1,447,136 - -0.8
1,447,136 - -0.2
1,447,136 - -0.8
1,447,177 + +0.4
1,447,177 + -0.6
1,447,177 + +0.5
1,447,177 + -0.8
1,447,178 - -0.0
1,447,178 - -0.9
1,447,244 + -1.6
1,448,723 + -0.2
1,448,723 + -0.2

Or see this region's nucleotide sequence