Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1062

Experiment: KB with Nalidixic 0.775 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1061 and Psyr_1062 are separated by 40 nucleotidesPsyr_1062 and Psyr_1063 are separated by 100 nucleotides Psyr_1061: Psyr_1061 - alginate biosynthesis protein Alg44, at 1,201,929 to 1,203,101 _1061 Psyr_1062: Psyr_1062 - alginate biosynthesis protein Alg8, at 1,203,142 to 1,204,623 _1062 Psyr_1063: Psyr_1063 - GDP-mannose 6-dehydrogenase, at 1,204,724 to 1,206,040 _1063 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -2 -1 0 1 2at 1202.335 kb on + strand, within Psyr_1061at 1202.336 kb on - strand, within Psyr_1061at 1202.474 kb on + strand, within Psyr_1061at 1202.475 kb on - strand, within Psyr_1061at 1202.545 kb on + strand, within Psyr_1061at 1202.555 kb on - strand, within Psyr_1061at 1202.555 kb on - strand, within Psyr_1061at 1202.982 kb on + strand, within Psyr_1061at 1202.982 kb on + strand, within Psyr_1061at 1202.982 kb on + strand, within Psyr_1061at 1203.072 kb on + strandat 1203.072 kb on + strandat 1203.073 kb on - strandat 1203.073 kb on - strandat 1203.095 kb on + strandat 1203.095 kb on + strandat 1203.095 kb on + strandat 1203.095 kb on + strandat 1203.096 kb on - strandat 1203.250 kb on + strandat 1203.251 kb on - strandat 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.335 kb on + strand, within Psyr_1062at 1203.335 kb on + strand, within Psyr_1062at 1203.335 kb on + strand, within Psyr_1062at 1203.336 kb on - strand, within Psyr_1062at 1203.336 kb on - strand, within Psyr_1062at 1203.338 kb on + strand, within Psyr_1062at 1203.339 kb on - strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.455 kb on + strand, within Psyr_1062at 1203.456 kb on - strand, within Psyr_1062at 1203.559 kb on + strand, within Psyr_1062at 1203.559 kb on + strand, within Psyr_1062at 1203.560 kb on - strand, within Psyr_1062at 1203.614 kb on + strand, within Psyr_1062at 1203.614 kb on + strand, within Psyr_1062at 1203.614 kb on + strand, within Psyr_1062at 1203.615 kb on - strand, within Psyr_1062at 1203.615 kb on - strand, within Psyr_1062at 1203.692 kb on + strand, within Psyr_1062at 1203.692 kb on + strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.950 kb on + strand, within Psyr_1062at 1203.950 kb on + strand, within Psyr_1062at 1203.951 kb on - strand, within Psyr_1062at 1204.304 kb on + strand, within Psyr_1062at 1204.304 kb on + strand, within Psyr_1062at 1204.305 kb on - strand, within Psyr_1062at 1204.305 kb on - strand, within Psyr_1062at 1204.424 kb on + strand, within Psyr_1062at 1204.502 kb on - strandat 1204.502 kb on - strandat 1204.502 kb on - strandat 1204.503 kb on + strandat 1204.503 kb on + strandat 1204.504 kb on - strandat 1204.504 kb on - strandat 1204.537 kb on - strandat 1204.571 kb on - strandat 1204.571 kb on - strandat 1204.574 kb on + strandat 1204.574 kb on + strandat 1204.574 kb on + strandat 1204.574 kb on + strandat 1204.575 kb on - strandat 1204.575 kb on - strandat 1204.597 kb on + strandat 1204.635 kb on + strandat 1204.635 kb on + strandat 1204.635 kb on + strandat 1204.636 kb on - strandat 1204.735 kb on + strandat 1204.735 kb on + strandat 1204.938 kb on + strand, within Psyr_1063at 1204.938 kb on + strand, within Psyr_1063at 1204.938 kb on + strand, within Psyr_1063at 1204.939 kb on - strand, within Psyr_1063at 1204.939 kb on - strand, within Psyr_1063at 1204.968 kb on + strand, within Psyr_1063at 1204.968 kb on + strand, within Psyr_1063at 1205.033 kb on + strand, within Psyr_1063at 1205.034 kb on - strand, within Psyr_1063at 1205.109 kb on + strand, within Psyr_1063at 1205.153 kb on - strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.271 kb on + strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.272 kb on - strand, within Psyr_1063at 1205.275 kb on - strand, within Psyr_1063at 1205.409 kb on + strand, within Psyr_1063at 1205.409 kb on + strand, within Psyr_1063at 1205.410 kb on - strand, within Psyr_1063at 1205.470 kb on - strand, within Psyr_1063at 1205.539 kb on - strand, within Psyr_1063at 1205.539 kb on - strand, within Psyr_1063at 1205.554 kb on + strand, within Psyr_1063

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 0.775 ug/ml
remove
1,202,335 + Psyr_1061 0.35 +0.4
1,202,336 - Psyr_1061 0.35 +0.1
1,202,474 + Psyr_1061 0.46 +0.5
1,202,475 - Psyr_1061 0.47 -0.2
1,202,545 + Psyr_1061 0.53 +0.1
1,202,555 - Psyr_1061 0.53 +0.4
1,202,555 - Psyr_1061 0.53 +1.2
1,202,982 + Psyr_1061 0.90 +0.5
1,202,982 + Psyr_1061 0.90 +1.3
1,202,982 + Psyr_1061 0.90 -0.2
1,203,072 + -1.0
1,203,072 + +0.3
1,203,073 - +1.6
1,203,073 - +0.6
1,203,095 + -0.3
1,203,095 + -0.0
1,203,095 + -0.4
1,203,095 + +0.4
1,203,096 - -1.3
1,203,250 + -1.2
1,203,251 - +0.2
1,203,302 + Psyr_1062 0.11 -0.3
1,203,302 + Psyr_1062 0.11 -0.2
1,203,302 + Psyr_1062 0.11 -0.2
1,203,302 + Psyr_1062 0.11 -0.0
1,203,302 + Psyr_1062 0.11 -0.3
1,203,302 + Psyr_1062 0.11 -0.7
1,203,303 - Psyr_1062 0.11 -1.8
1,203,303 - Psyr_1062 0.11 +0.6
1,203,303 - Psyr_1062 0.11 +0.4
1,203,303 - Psyr_1062 0.11 -1.2
1,203,303 - Psyr_1062 0.11 +0.3
1,203,335 + Psyr_1062 0.13 -0.2
1,203,335 + Psyr_1062 0.13 +0.4
1,203,335 + Psyr_1062 0.13 +0.3
1,203,336 - Psyr_1062 0.13 +0.4
1,203,336 - Psyr_1062 0.13 +1.5
1,203,338 + Psyr_1062 0.13 -0.5
1,203,339 - Psyr_1062 0.13 -0.0
1,203,431 + Psyr_1062 0.20 +0.2
1,203,431 + Psyr_1062 0.20 +0.5
1,203,431 + Psyr_1062 0.20 -0.0
1,203,431 + Psyr_1062 0.20 +0.4
1,203,431 + Psyr_1062 0.20 +0.7
1,203,432 - Psyr_1062 0.20 -2.2
1,203,432 - Psyr_1062 0.20 -1.6
1,203,432 - Psyr_1062 0.20 -0.2
1,203,432 - Psyr_1062 0.20 -0.9
1,203,455 + Psyr_1062 0.21 +0.1
1,203,456 - Psyr_1062 0.21 +0.2
1,203,559 + Psyr_1062 0.28 -1.6
1,203,559 + Psyr_1062 0.28 +0.3
1,203,560 - Psyr_1062 0.28 -0.0
1,203,614 + Psyr_1062 0.32 +0.7
1,203,614 + Psyr_1062 0.32 -0.3
1,203,614 + Psyr_1062 0.32 +0.4
1,203,615 - Psyr_1062 0.32 -0.4
1,203,615 - Psyr_1062 0.32 -0.4
1,203,692 + Psyr_1062 0.37 +0.4
1,203,692 + Psyr_1062 0.37 -0.2
1,203,693 - Psyr_1062 0.37 -0.6
1,203,693 - Psyr_1062 0.37 +0.0
1,203,950 + Psyr_1062 0.55 +0.4
1,203,950 + Psyr_1062 0.55 -0.1
1,203,951 - Psyr_1062 0.55 -0.3
1,204,304 + Psyr_1062 0.78 -0.3
1,204,304 + Psyr_1062 0.78 -0.1
1,204,305 - Psyr_1062 0.78 -0.0
1,204,305 - Psyr_1062 0.78 -0.8
1,204,424 + Psyr_1062 0.87 -0.3
1,204,502 - -0.0
1,204,502 - -0.6
1,204,502 - -0.5
1,204,503 + +0.7
1,204,503 + -1.0
1,204,504 - -0.7
1,204,504 - +1.6
1,204,537 - -0.1
1,204,571 - -0.7
1,204,571 - +0.7
1,204,574 + -0.6
1,204,574 + -0.7
1,204,574 + -0.9
1,204,574 + +0.1
1,204,575 - +1.1
1,204,575 - +0.2
1,204,597 + +1.0
1,204,635 + -0.2
1,204,635 + +1.2
1,204,635 + -0.4
1,204,636 - -1.0
1,204,735 + +1.6
1,204,735 + +0.5
1,204,938 + Psyr_1063 0.16 -0.6
1,204,938 + Psyr_1063 0.16 -0.7
1,204,938 + Psyr_1063 0.16 +0.4
1,204,939 - Psyr_1063 0.16 -1.0
1,204,939 - Psyr_1063 0.16 +0.9
1,204,968 + Psyr_1063 0.19 +1.0
1,204,968 + Psyr_1063 0.19 +0.8
1,205,033 + Psyr_1063 0.23 -0.3
1,205,034 - Psyr_1063 0.24 -0.2
1,205,109 + Psyr_1063 0.29 -0.0
1,205,153 - Psyr_1063 0.33 +0.4
1,205,271 + Psyr_1063 0.42 +0.6
1,205,271 + Psyr_1063 0.42 -0.8
1,205,271 + Psyr_1063 0.42 -1.1
1,205,271 + Psyr_1063 0.42 -0.1
1,205,271 + Psyr_1063 0.42 +1.5
1,205,271 + Psyr_1063 0.42 +0.5
1,205,271 + Psyr_1063 0.42 -0.1
1,205,271 + Psyr_1063 0.42 +1.3
1,205,271 + Psyr_1063 0.42 +1.2
1,205,271 + Psyr_1063 0.42 +0.3
1,205,271 + Psyr_1063 0.42 -0.3
1,205,271 + Psyr_1063 0.42 +1.7
1,205,271 + Psyr_1063 0.42 -0.4
1,205,271 + Psyr_1063 0.42 +0.9
1,205,271 + Psyr_1063 0.42 -0.1
1,205,271 + Psyr_1063 0.42 -0.2
1,205,272 - Psyr_1063 0.42 -0.5
1,205,272 - Psyr_1063 0.42 +0.8
1,205,272 - Psyr_1063 0.42 +0.4
1,205,272 - Psyr_1063 0.42 +2.4
1,205,272 - Psyr_1063 0.42 -0.6
1,205,272 - Psyr_1063 0.42 +0.5
1,205,272 - Psyr_1063 0.42 +0.7
1,205,272 - Psyr_1063 0.42 +1.0
1,205,275 - Psyr_1063 0.42 +0.1
1,205,409 + Psyr_1063 0.52 -0.3
1,205,409 + Psyr_1063 0.52 +1.1
1,205,410 - Psyr_1063 0.52 +0.2
1,205,470 - Psyr_1063 0.57 +0.7
1,205,539 - Psyr_1063 0.62 -0.0
1,205,539 - Psyr_1063 0.62 +0.4
1,205,554 + Psyr_1063 0.63 +0.5

Or see this region's nucleotide sequence