Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_912

Experiment: Putrescine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_911 and PfGW456L13_912 are separated by 157 nucleotidesPfGW456L13_912 and PfGW456L13_913 are separated by 245 nucleotides PfGW456L13_911 - Adenylate cyclase (EC 4.6.1.1), at 1,019,390 to 1,020,757 _911 PfGW456L13_912 - Acetylornithine deacetylase (EC 3.5.1.16), at 1,020,915 to 1,022,063 _912 PfGW456L13_913 - N-acetylglutamate synthase (EC 2.3.1.1), at 1,022,309 to 1,023,607 _913 Position (kb) 1020 1021 1022 1023Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1020.021 kb on + strand, within PfGW456L13_911at 1020.021 kb on + strand, within PfGW456L13_911at 1020.022 kb on - strand, within PfGW456L13_911at 1020.132 kb on + strand, within PfGW456L13_911at 1020.132 kb on + strand, within PfGW456L13_911at 1020.132 kb on + strand, within PfGW456L13_911at 1020.133 kb on - strand, within PfGW456L13_911at 1020.133 kb on - strand, within PfGW456L13_911at 1020.133 kb on - strand, within PfGW456L13_911at 1020.147 kb on + strand, within PfGW456L13_911at 1020.147 kb on + strand, within PfGW456L13_911at 1020.147 kb on + strand, within PfGW456L13_911at 1020.147 kb on + strand, within PfGW456L13_911at 1020.501 kb on + strand, within PfGW456L13_911at 1020.501 kb on + strand, within PfGW456L13_911at 1020.502 kb on - strand, within PfGW456L13_911at 1020.633 kb on + strandat 1020.633 kb on + strandat 1020.633 kb on + strandat 1020.633 kb on + strandat 1020.634 kb on - strandat 1020.634 kb on - strandat 1020.822 kb on + strandat 1020.823 kb on - strandat 1020.823 kb on - strandat 1020.823 kb on - strandat 1020.837 kb on + strandat 1020.838 kb on - strandat 1020.838 kb on - strandat 1020.840 kb on + strandat 1020.840 kb on + strandat 1020.857 kb on + strandat 1020.857 kb on + strandat 1020.857 kb on + strandat 1020.857 kb on + strandat 1020.858 kb on - strandat 1020.858 kb on - strandat 1020.879 kb on + strandat 1020.879 kb on + strandat 1020.879 kb on + strandat 1020.879 kb on + strandat 1020.879 kb on + strandat 1020.879 kb on + strandat 1020.879 kb on + strandat 1020.879 kb on + strandat 1020.879 kb on + strandat 1020.879 kb on + strandat 1020.880 kb on - strandat 1020.880 kb on - strandat 1020.880 kb on - strandat 1020.880 kb on - strandat 1020.880 kb on - strandat 1021.052 kb on + strand, within PfGW456L13_912at 1021.053 kb on - strand, within PfGW456L13_912at 1021.053 kb on - strand, within PfGW456L13_912at 1021.568 kb on - strand, within PfGW456L13_912at 1021.568 kb on - strand, within PfGW456L13_912at 1021.785 kb on + strand, within PfGW456L13_912at 1021.786 kb on - strand, within PfGW456L13_912at 1021.908 kb on + strand, within PfGW456L13_912at 1021.908 kb on + strand, within PfGW456L13_912at 1021.908 kb on + strand, within PfGW456L13_912at 1021.908 kb on + strand, within PfGW456L13_912at 1021.909 kb on - strand, within PfGW456L13_912at 1021.909 kb on - strand, within PfGW456L13_912at 1021.909 kb on - strand, within PfGW456L13_912at 1021.909 kb on - strand, within PfGW456L13_912at 1021.956 kb on - strandat 1021.984 kb on - strandat 1022.009 kb on + strandat 1022.009 kb on + strandat 1022.010 kb on - strandat 1022.010 kb on - strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.020 kb on + strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.021 kb on - strandat 1022.023 kb on + strandat 1022.024 kb on - strandat 1022.024 kb on - strandat 1022.024 kb on - strandat 1022.043 kb on + strandat 1022.043 kb on + strandat 1022.043 kb on + strandat 1022.043 kb on + strandat 1022.043 kb on + strandat 1022.044 kb on - strandat 1022.044 kb on - strandat 1022.044 kb on - strandat 1022.044 kb on - strandat 1022.044 kb on - strandat 1022.061 kb on + strandat 1022.061 kb on + strandat 1022.061 kb on + strandat 1022.131 kb on - strandat 1022.131 kb on - strandat 1022.156 kb on - strandat 1022.156 kb on - strandat 1022.171 kb on + strandat 1022.171 kb on + strandat 1022.287 kb on + strandat 1022.287 kb on + strandat 1022.287 kb on + strandat 1022.288 kb on - strandat 1022.288 kb on - strandat 1022.291 kb on + strandat 1022.291 kb on + strandat 1022.291 kb on + strandat 1022.291 kb on + strandat 1022.291 kb on + strandat 1022.291 kb on + strandat 1022.292 kb on - strandat 1022.292 kb on - strandat 1022.292 kb on - strandat 1022.294 kb on + strandat 1022.294 kb on + strandat 1022.294 kb on + strandat 1022.318 kb on + strandat 1022.318 kb on + strandat 1022.319 kb on - strandat 1022.319 kb on - strandat 1022.348 kb on + strandat 1022.348 kb on + strandat 1022.348 kb on + strandat 1022.349 kb on - strandat 1022.426 kb on - strandat 1022.426 kb on - strandat 1022.604 kb on + strand, within PfGW456L13_913at 1022.604 kb on + strand, within PfGW456L13_913at 1022.604 kb on + strand, within PfGW456L13_913at 1022.605 kb on - strand, within PfGW456L13_913at 1022.605 kb on - strand, within PfGW456L13_913at 1022.605 kb on - strand, within PfGW456L13_913at 1023.010 kb on + strand, within PfGW456L13_913at 1023.010 kb on + strand, within PfGW456L13_913at 1023.014 kb on + strand, within PfGW456L13_913at 1023.014 kb on + strand, within PfGW456L13_913at 1023.014 kb on + strand, within PfGW456L13_913at 1023.014 kb on + strand, within PfGW456L13_913at 1023.014 kb on + strand, within PfGW456L13_913at 1023.014 kb on + strand, within PfGW456L13_913at 1023.015 kb on + strand, within PfGW456L13_913at 1023.015 kb on - strand, within PfGW456L13_913at 1023.015 kb on - strand, within PfGW456L13_913at 1023.015 kb on - strand, within PfGW456L13_913

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
remove
1,020,021 + PfGW456L13_911 0.46 -0.1
1,020,021 + PfGW456L13_911 0.46 -0.2
1,020,022 - PfGW456L13_911 0.46 -0.4
1,020,132 + PfGW456L13_911 0.54 +0.8
1,020,132 + PfGW456L13_911 0.54 +0.7
1,020,132 + PfGW456L13_911 0.54 -1.3
1,020,133 - PfGW456L13_911 0.54 +1.1
1,020,133 - PfGW456L13_911 0.54 -0.0
1,020,133 - PfGW456L13_911 0.54 -3.5
1,020,147 + PfGW456L13_911 0.55 -1.1
1,020,147 + PfGW456L13_911 0.55 -1.8
1,020,147 + PfGW456L13_911 0.55 -0.8
1,020,147 + PfGW456L13_911 0.55 +1.7
1,020,501 + PfGW456L13_911 0.81 +0.3
1,020,501 + PfGW456L13_911 0.81 +0.3
1,020,502 - PfGW456L13_911 0.81 +0.6
1,020,633 + +0.0
1,020,633 + -0.4
1,020,633 + -1.4
1,020,633 + -0.2
1,020,634 - -0.4
1,020,634 - -0.8
1,020,822 + -0.3
1,020,823 - -0.5
1,020,823 - +0.5
1,020,823 - -0.6
1,020,837 + +0.7
1,020,838 - +1.1
1,020,838 - -1.9
1,020,840 + +0.3
1,020,840 + +0.3
1,020,857 + -0.3
1,020,857 + +0.0
1,020,857 + -0.1
1,020,857 + -0.5
1,020,858 - -1.5
1,020,858 - +0.9
1,020,879 + -2.2
1,020,879 + +0.6
1,020,879 + -0.8
1,020,879 + -0.0
1,020,879 + -0.9
1,020,879 + +0.1
1,020,879 + +3.3
1,020,879 + -0.3
1,020,879 + +0.4
1,020,879 + -0.7
1,020,880 - -1.6
1,020,880 - +1.6
1,020,880 - -0.4
1,020,880 - -0.3
1,020,880 - -2.4
1,021,052 + PfGW456L13_912 0.12 -0.4
1,021,053 - PfGW456L13_912 0.12 -0.4
1,021,053 - PfGW456L13_912 0.12 -0.3
1,021,568 - PfGW456L13_912 0.57 -0.3
1,021,568 - PfGW456L13_912 0.57 +0.2
1,021,785 + PfGW456L13_912 0.76 +0.6
1,021,786 - PfGW456L13_912 0.76 +0.0
1,021,908 + PfGW456L13_912 0.86 +1.6
1,021,908 + PfGW456L13_912 0.86 -2.1
1,021,908 + PfGW456L13_912 0.86 -1.8
1,021,908 + PfGW456L13_912 0.86 +0.3
1,021,909 - PfGW456L13_912 0.87 -0.8
1,021,909 - PfGW456L13_912 0.87 -2.0
1,021,909 - PfGW456L13_912 0.87 -0.3
1,021,909 - PfGW456L13_912 0.87 -2.0
1,021,956 - +0.1
1,021,984 - +0.5
1,022,009 + -1.1
1,022,009 + +1.7
1,022,010 - +0.0
1,022,010 - -1.7
1,022,020 + +0.7
1,022,020 + -0.1
1,022,020 + -1.5
1,022,020 + -0.5
1,022,020 + -1.5
1,022,020 + +0.5
1,022,020 + +0.8
1,022,020 + +1.8
1,022,020 + -0.8
1,022,020 + -0.5
1,022,020 + -1.0
1,022,020 + +1.0
1,022,020 + -0.1
1,022,020 + +0.9
1,022,020 + -1.7
1,022,020 + +0.5
1,022,020 + -2.1
1,022,020 + +1.5
1,022,020 + -1.5
1,022,020 + -0.0
1,022,021 - +0.2
1,022,021 - -1.2
1,022,021 - -0.6
1,022,021 - +0.0
1,022,021 - -1.8
1,022,021 - -0.0
1,022,021 - -0.0
1,022,021 - +0.8
1,022,021 - -1.6
1,022,021 - +1.7
1,022,021 - +0.3
1,022,021 - +0.3
1,022,021 - -1.0
1,022,021 - -0.1
1,022,021 - +0.3
1,022,021 - +1.4
1,022,023 + +0.2
1,022,024 - -0.2
1,022,024 - -0.1
1,022,024 - -0.5
1,022,043 + -2.8
1,022,043 + -1.0
1,022,043 + +2.0
1,022,043 + +0.1
1,022,043 + +0.6
1,022,044 - +0.0
1,022,044 - +0.4
1,022,044 - -0.6
1,022,044 - -2.3
1,022,044 - -0.2
1,022,061 + +0.1
1,022,061 + +0.5
1,022,061 + -2.1
1,022,131 - +0.5
1,022,131 - -1.4
1,022,156 - +0.3
1,022,156 - -0.6
1,022,171 + +0.8
1,022,171 + -1.1
1,022,287 + +0.5
1,022,287 + -0.6
1,022,287 + -0.5
1,022,288 - -1.3
1,022,288 - +0.7
1,022,291 + -0.1
1,022,291 + +0.6
1,022,291 + +0.3
1,022,291 + +0.4
1,022,291 + +0.7
1,022,291 + -0.2
1,022,292 - -1.1
1,022,292 - -2.2
1,022,292 - -0.4
1,022,294 + -0.3
1,022,294 + +0.7
1,022,294 + -0.3
1,022,318 + -0.1
1,022,318 + +0.6
1,022,319 - -1.3
1,022,319 - -1.3
1,022,348 + -1.3
1,022,348 + -0.0
1,022,348 + -0.8
1,022,349 - +2.3
1,022,426 - -2.1
1,022,426 - -0.8
1,022,604 + PfGW456L13_913 0.23 -0.1
1,022,604 + PfGW456L13_913 0.23 -1.1
1,022,604 + PfGW456L13_913 0.23 -1.3
1,022,605 - PfGW456L13_913 0.23 +0.1
1,022,605 - PfGW456L13_913 0.23 +1.7
1,022,605 - PfGW456L13_913 0.23 -1.3
1,023,010 + PfGW456L13_913 0.54 +1.0
1,023,010 + PfGW456L13_913 0.54 -0.9
1,023,014 + PfGW456L13_913 0.54 -1.4
1,023,014 + PfGW456L13_913 0.54 -2.0
1,023,014 + PfGW456L13_913 0.54 -2.1
1,023,014 + PfGW456L13_913 0.54 -1.5
1,023,014 + PfGW456L13_913 0.54 -1.7
1,023,014 + PfGW456L13_913 0.54 -0.5
1,023,015 + PfGW456L13_913 0.54 -1.1
1,023,015 - PfGW456L13_913 0.54 -1.1
1,023,015 - PfGW456L13_913 0.54 -1.6
1,023,015 - PfGW456L13_913 0.54 +0.7

Or see this region's nucleotide sequence