Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_858 and PfGW456L13_859 overlap by 4 nucleotides PfGW456L13_859 and PfGW456L13_860 are separated by 263 nucleotides PfGW456L13_860 and PfGW456L13_861 are separated by 177 nucleotides
PfGW456L13_858 - Uroporphyrinogen-III synthase (EC 4.2.1.75), at 964,293 to 965,456
_858
PfGW456L13_859 - Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 965,453 to 966,691
_859
PfGW456L13_860 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 966,955 to 967,506
_860
PfGW456L13_861 - Regulator of sigma D, at 967,684 to 968,142
_861
Position (kb) 965
966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 964.499 kb on + strand, within PfGW456L13_858 at 964.642 kb on + strand, within PfGW456L13_858 at 964.643 kb on - strand, within PfGW456L13_858 at 964.643 kb on - strand, within PfGW456L13_858 at 964.813 kb on + strand, within PfGW456L13_858 at 964.977 kb on + strand, within PfGW456L13_858 at 964.977 kb on + strand, within PfGW456L13_858 at 964.977 kb on + strand, within PfGW456L13_858 at 964.978 kb on - strand, within PfGW456L13_858 at 964.978 kb on - strand, within PfGW456L13_858 at 964.978 kb on - strand, within PfGW456L13_858 at 965.068 kb on - strand, within PfGW456L13_858 at 965.206 kb on - strand, within PfGW456L13_858 at 965.465 kb on + strand at 965.465 kb on + strand at 965.465 kb on + strand at 965.466 kb on - strand at 965.466 kb on - strand at 965.466 kb on - strand at 965.549 kb on + strand at 965.550 kb on - strand at 965.584 kb on + strand, within PfGW456L13_859 at 965.585 kb on - strand, within PfGW456L13_859 at 965.813 kb on + strand, within PfGW456L13_859 at 965.814 kb on - strand, within PfGW456L13_859 at 965.814 kb on - strand, within PfGW456L13_859 at 965.816 kb on + strand, within PfGW456L13_859 at 965.817 kb on - strand, within PfGW456L13_859 at 965.817 kb on - strand, within PfGW456L13_859 at 966.275 kb on + strand, within PfGW456L13_859 at 966.276 kb on - strand, within PfGW456L13_859 at 966.276 kb on - strand, within PfGW456L13_859 at 966.350 kb on + strand, within PfGW456L13_859 at 966.350 kb on + strand, within PfGW456L13_859 at 966.374 kb on + strand, within PfGW456L13_859 at 966.374 kb on + strand, within PfGW456L13_859 at 966.480 kb on + strand, within PfGW456L13_859 at 966.480 kb on + strand, within PfGW456L13_859 at 966.480 kb on + strand, within PfGW456L13_859 at 966.480 kb on + strand, within PfGW456L13_859 at 966.481 kb on - strand, within PfGW456L13_859 at 966.481 kb on - strand, within PfGW456L13_859 at 966.518 kb on + strand, within PfGW456L13_859 at 966.518 kb on + strand, within PfGW456L13_859 at 966.540 kb on + strand, within PfGW456L13_859 at 966.773 kb on + strand at 966.773 kb on + strand at 966.774 kb on - strand at 966.774 kb on - strand at 966.774 kb on - strand at 966.774 kb on - strand at 966.774 kb on - strand at 966.816 kb on - strand at 966.825 kb on + strand at 966.825 kb on + strand at 966.825 kb on + strand at 966.825 kb on + strand at 966.826 kb on - strand at 966.826 kb on - strand at 966.826 kb on - strand at 966.826 kb on - strand at 966.826 kb on - strand at 966.826 kb on - strand at 966.832 kb on + strand at 966.833 kb on - strand at 966.860 kb on + strand at 966.860 kb on + strand at 966.861 kb on - strand at 966.919 kb on - strand at 966.923 kb on + strand at 966.937 kb on + strand at 966.938 kb on - strand at 966.938 kb on - strand at 967.027 kb on + strand, within PfGW456L13_860 at 967.027 kb on + strand, within PfGW456L13_860 at 967.028 kb on - strand, within PfGW456L13_860 at 967.028 kb on - strand, within PfGW456L13_860 at 967.028 kb on - strand, within PfGW456L13_860 at 967.030 kb on + strand, within PfGW456L13_860 at 967.030 kb on + strand, within PfGW456L13_860 at 967.031 kb on - strand, within PfGW456L13_860 at 967.039 kb on + strand, within PfGW456L13_860 at 967.039 kb on + strand, within PfGW456L13_860 at 967.039 kb on + strand, within PfGW456L13_860 at 967.039 kb on + strand, within PfGW456L13_860 at 967.040 kb on - strand, within PfGW456L13_860 at 967.159 kb on + strand, within PfGW456L13_860 at 967.159 kb on + strand, within PfGW456L13_860 at 967.159 kb on + strand, within PfGW456L13_860 at 967.159 kb on + strand, within PfGW456L13_860 at 967.307 kb on + strand, within PfGW456L13_860 at 967.308 kb on - strand, within PfGW456L13_860 at 967.423 kb on + strand, within PfGW456L13_860 at 967.505 kb on - strand at 967.514 kb on + strand at 967.514 kb on + strand at 967.514 kb on + strand at 967.515 kb on - strand at 967.515 kb on - strand at 967.515 kb on - strand at 967.515 kb on - strand at 967.515 kb on - strand at 967.515 kb on - strand at 967.515 kb on - strand at 967.524 kb on - strand at 967.524 kb on - strand at 967.534 kb on + strand at 967.534 kb on + strand at 967.535 kb on - strand at 967.561 kb on + strand at 967.589 kb on + strand at 967.589 kb on + strand at 967.589 kb on + strand at 967.589 kb on + strand at 967.589 kb on + strand at 967.589 kb on + strand at 967.589 kb on + strand at 967.589 kb on + strand at 967.589 kb on + strand at 967.589 kb on + strand at 967.590 kb on - strand at 967.590 kb on - strand at 967.590 kb on - strand at 967.590 kb on - strand at 967.590 kb on - strand at 967.590 kb on - strand at 967.590 kb on - strand at 967.630 kb on + strand at 967.630 kb on + strand at 967.630 kb on + strand at 967.630 kb on + strand at 967.630 kb on + strand at 967.631 kb on - strand at 967.631 kb on - strand at 967.631 kb on - strand at 967.631 kb on - strand at 967.649 kb on + strand at 967.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 964,499 + PfGW456L13_858 0.18 +0.0 964,642 + PfGW456L13_858 0.30 -1.0 964,643 - PfGW456L13_858 0.30 +1.8 964,643 - PfGW456L13_858 0.30 +0.5 964,813 + PfGW456L13_858 0.45 -0.3 964,977 + PfGW456L13_858 0.59 +1.4 964,977 + PfGW456L13_858 0.59 +0.4 964,977 + PfGW456L13_858 0.59 -1.2 964,978 - PfGW456L13_858 0.59 +0.8 964,978 - PfGW456L13_858 0.59 -0.6 964,978 - PfGW456L13_858 0.59 -0.5 965,068 - PfGW456L13_858 0.67 -0.7 965,206 - PfGW456L13_858 0.78 -0.5 965,465 + -0.8 965,465 + +0.8 965,465 + -0.3 965,466 - +0.1 965,466 - -0.3 965,466 - +1.0 965,549 + -0.2 965,550 - +0.8 965,584 + PfGW456L13_859 0.11 -1.5 965,585 - PfGW456L13_859 0.11 -0.0 965,813 + PfGW456L13_859 0.29 +0.5 965,814 - PfGW456L13_859 0.29 +0.4 965,814 - PfGW456L13_859 0.29 +1.0 965,816 + PfGW456L13_859 0.29 -1.0 965,817 - PfGW456L13_859 0.29 +1.5 965,817 - PfGW456L13_859 0.29 +1.0 966,275 + PfGW456L13_859 0.66 -1.2 966,276 - PfGW456L13_859 0.66 +0.4 966,276 - PfGW456L13_859 0.66 -0.9 966,350 + PfGW456L13_859 0.72 +0.2 966,350 + PfGW456L13_859 0.72 +1.8 966,374 + PfGW456L13_859 0.74 -0.2 966,374 + PfGW456L13_859 0.74 -0.8 966,480 + PfGW456L13_859 0.83 +1.1 966,480 + PfGW456L13_859 0.83 -1.0 966,480 + PfGW456L13_859 0.83 -0.7 966,480 + PfGW456L13_859 0.83 -1.5 966,481 - PfGW456L13_859 0.83 +0.0 966,481 - PfGW456L13_859 0.83 +1.0 966,518 + PfGW456L13_859 0.86 +0.0 966,518 + PfGW456L13_859 0.86 -0.5 966,540 + PfGW456L13_859 0.88 +1.2 966,773 + +0.8 966,773 + -0.5 966,774 - -0.2 966,774 - -0.8 966,774 - -1.5 966,774 - -0.6 966,774 - +0.4 966,816 - +1.3 966,825 + -0.2 966,825 + +0.5 966,825 + +0.7 966,825 + +0.8 966,826 - +1.0 966,826 - +1.4 966,826 - +0.4 966,826 - -1.0 966,826 - -0.1 966,826 - -0.2 966,832 + -0.6 966,833 - -0.3 966,860 + -0.6 966,860 + +1.4 966,861 - +3.4 966,919 - +0.9 966,923 + -0.7 966,937 + +1.7 966,938 - +1.0 966,938 - -0.9 967,027 + PfGW456L13_860 0.13 -0.7 967,027 + PfGW456L13_860 0.13 -2.2 967,028 - PfGW456L13_860 0.13 -0.1 967,028 - PfGW456L13_860 0.13 -0.8 967,028 - PfGW456L13_860 0.13 +0.4 967,030 + PfGW456L13_860 0.14 +1.1 967,030 + PfGW456L13_860 0.14 -1.1 967,031 - PfGW456L13_860 0.14 +0.4 967,039 + PfGW456L13_860 0.15 +0.4 967,039 + PfGW456L13_860 0.15 -0.4 967,039 + PfGW456L13_860 0.15 +0.5 967,039 + PfGW456L13_860 0.15 -1.1 967,040 - PfGW456L13_860 0.15 +0.1 967,159 + PfGW456L13_860 0.37 +0.5 967,159 + PfGW456L13_860 0.37 +0.4 967,159 + PfGW456L13_860 0.37 +2.2 967,159 + PfGW456L13_860 0.37 -1.3 967,307 + PfGW456L13_860 0.64 -1.9 967,308 - PfGW456L13_860 0.64 +1.2 967,423 + PfGW456L13_860 0.85 +0.8 967,505 - +0.4 967,514 + +1.4 967,514 + -1.0 967,514 + -1.6 967,515 - -0.7 967,515 - -0.2 967,515 - -0.5 967,515 - +0.3 967,515 - +1.0 967,515 - -1.2 967,515 - +0.5 967,524 - +0.4 967,524 - +1.5 967,534 + -0.4 967,534 + -1.1 967,535 - +1.7 967,561 + +0.2 967,589 + +1.0 967,589 + +1.4 967,589 + +0.2 967,589 + -1.1 967,589 + -3.0 967,589 + -0.4 967,589 + +0.8 967,589 + -1.2 967,589 + +0.4 967,589 + +1.0 967,590 - +0.2 967,590 - -0.1 967,590 - +0.3 967,590 - +0.0 967,590 - +0.7 967,590 - -1.9 967,590 - -1.1 967,630 + +0.4 967,630 + +0.5 967,630 + -0.3 967,630 + -0.2 967,630 + -0.0 967,631 - -0.5 967,631 - +0.5 967,631 - +1.6 967,631 - -0.5 967,649 + +0.6 967,650 - +0.6
Or see this region's nucleotide sequence