Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_585

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_584 and PfGW456L13_585 are separated by 10 nucleotidesPfGW456L13_585 and PfGW456L13_586 are separated by 7 nucleotides PfGW456L13_584 - alginate biosynthesis transcriptional regulatory protein AlgB, at 675,477 to 676,823 _584 PfGW456L13_585 - Sensory box histidine kinase, at 676,834 to 678,624 _585 PfGW456L13_586 - Rtn protein, at 678,632 to 680,155 _586 Position (kb) 676 677 678 679Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 675.895 kb on + strand, within PfGW456L13_584at 675.895 kb on + strand, within PfGW456L13_584at 675.896 kb on - strand, within PfGW456L13_584at 675.896 kb on - strand, within PfGW456L13_584at 675.896 kb on - strand, within PfGW456L13_584at 675.896 kb on - strand, within PfGW456L13_584at 675.987 kb on - strand, within PfGW456L13_584at 676.278 kb on + strand, within PfGW456L13_584at 676.278 kb on + strand, within PfGW456L13_584at 676.393 kb on - strand, within PfGW456L13_584at 676.393 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.410 kb on - strand, within PfGW456L13_584at 676.448 kb on + strand, within PfGW456L13_584at 676.448 kb on + strand, within PfGW456L13_584at 676.448 kb on + strand, within PfGW456L13_584at 676.448 kb on + strand, within PfGW456L13_584at 676.449 kb on - strand, within PfGW456L13_584at 676.494 kb on + strand, within PfGW456L13_584at 676.494 kb on + strand, within PfGW456L13_584at 676.643 kb on + strand, within PfGW456L13_584at 676.812 kb on + strandat 676.812 kb on + strandat 676.812 kb on + strandat 676.813 kb on - strandat 676.813 kb on - strandat 676.971 kb on + strandat 676.971 kb on + strandat 676.972 kb on - strandat 677.086 kb on + strand, within PfGW456L13_585at 677.087 kb on - strand, within PfGW456L13_585at 677.087 kb on - strand, within PfGW456L13_585at 677.170 kb on + strand, within PfGW456L13_585at 677.170 kb on + strand, within PfGW456L13_585at 677.170 kb on + strand, within PfGW456L13_585at 677.171 kb on - strand, within PfGW456L13_585at 677.191 kb on + strand, within PfGW456L13_585at 677.191 kb on + strand, within PfGW456L13_585at 677.191 kb on + strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.192 kb on - strand, within PfGW456L13_585at 677.262 kb on - strand, within PfGW456L13_585at 677.301 kb on + strand, within PfGW456L13_585at 677.302 kb on - strand, within PfGW456L13_585at 677.302 kb on - strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strandat 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.585 kb on + strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.586 kb on - strand, within PfGW456L13_585at 677.685 kb on + strand, within PfGW456L13_585at 677.745 kb on + strand, within PfGW456L13_585at 677.867 kb on - strand, within PfGW456L13_585at 677.867 kb on - strand, within PfGW456L13_585at 677.901 kb on + strand, within PfGW456L13_585at 677.901 kb on + strand, within PfGW456L13_585at 677.902 kb on - strand, within PfGW456L13_585at 678.444 kb on + strand, within PfGW456L13_585at 678.444 kb on + strand, within PfGW456L13_585at 678.444 kb on + strand, within PfGW456L13_585at 678.445 kb on - strand, within PfGW456L13_585at 678.445 kb on - strand, within PfGW456L13_585at 678.445 kb on - strand, within PfGW456L13_585at 678.445 kb on - strand, within PfGW456L13_585at 678.445 kb on - strand, within PfGW456L13_585at 678.451 kb on + strandat 678.451 kb on + strandat 678.574 kb on + strandat 678.574 kb on + strandat 678.575 kb on - strandat 678.575 kb on - strandat 678.604 kb on + strandat 678.604 kb on + strandat 678.604 kb on + strandat 678.604 kb on + strandat 678.604 kb on + strandat 678.604 kb on + strandat 678.604 kb on + strandat 678.605 kb on - strandat 678.605 kb on - strandat 678.605 kb on - strandat 678.622 kb on + strandat 678.623 kb on - strandat 678.679 kb on + strandat 678.835 kb on + strand, within PfGW456L13_586at 678.930 kb on + strand, within PfGW456L13_586at 678.931 kb on - strand, within PfGW456L13_586at 678.945 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.158 kb on + strand, within PfGW456L13_586at 679.159 kb on - strand, within PfGW456L13_586at 679.159 kb on - strand, within PfGW456L13_586at 679.159 kb on - strand, within PfGW456L13_586at 679.159 kb on - strand, within PfGW456L13_586at 679.159 kb on - strand, within PfGW456L13_586at 679.159 kb on - strand, within PfGW456L13_586at 679.159 kb on - strand, within PfGW456L13_586at 679.159 kb on - strand, within PfGW456L13_586at 679.159 kb on - strand, within PfGW456L13_586at 679.159 kb on - strand, within PfGW456L13_586at 679.159 kb on - strand, within PfGW456L13_586at 679.365 kb on + strand, within PfGW456L13_586at 679.366 kb on - strand, within PfGW456L13_586at 679.366 kb on - strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.463 kb on + strand, within PfGW456L13_586at 679.464 kb on - strand, within PfGW456L13_586at 679.514 kb on - strand, within PfGW456L13_586at 679.551 kb on + strand, within PfGW456L13_586at 679.551 kb on + strand, within PfGW456L13_586at 679.578 kb on + strand, within PfGW456L13_586at 679.578 kb on + strand, within PfGW456L13_586at 679.578 kb on + strand, within PfGW456L13_586at 679.578 kb on + strand, within PfGW456L13_586at 679.578 kb on + strand, within PfGW456L13_586at 679.579 kb on - strandat 679.579 kb on - strand, within PfGW456L13_586at 679.579 kb on - strand, within PfGW456L13_586at 679.580 kb on + strand, within PfGW456L13_586at 679.580 kb on + strand, within PfGW456L13_586at 679.580 kb on + strand, within PfGW456L13_586at 679.581 kb on - strand, within PfGW456L13_586at 679.581 kb on - strand, within PfGW456L13_586at 679.581 kb on - strand, within PfGW456L13_586

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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675,895 + PfGW456L13_584 0.31 +0.8
675,895 + PfGW456L13_584 0.31 -0.9
675,896 - PfGW456L13_584 0.31 -0.8
675,896 - PfGW456L13_584 0.31 -1.3
675,896 - PfGW456L13_584 0.31 -0.4
675,896 - PfGW456L13_584 0.31 +0.3
675,987 - PfGW456L13_584 0.38 +1.4
676,278 + PfGW456L13_584 0.59 +0.6
676,278 + PfGW456L13_584 0.59 +1.1
676,393 - PfGW456L13_584 0.68 +0.3
676,393 - PfGW456L13_584 0.68 -0.6
676,410 - PfGW456L13_584 0.69 +2.8
676,410 - PfGW456L13_584 0.69 +1.2
676,410 - PfGW456L13_584 0.69 -0.6
676,410 - PfGW456L13_584 0.69 +1.6
676,410 - PfGW456L13_584 0.69 -0.1
676,410 - PfGW456L13_584 0.69 +0.8
676,448 + PfGW456L13_584 0.72 +1.1
676,448 + PfGW456L13_584 0.72 -1.0
676,448 + PfGW456L13_584 0.72 -1.3
676,448 + PfGW456L13_584 0.72 +0.4
676,449 - PfGW456L13_584 0.72 -1.5
676,494 + PfGW456L13_584 0.76 -1.3
676,494 + PfGW456L13_584 0.76 +0.8
676,643 + PfGW456L13_584 0.87 -0.6
676,812 + +0.0
676,812 + +1.2
676,812 + +0.6
676,813 - -0.7
676,813 - -1.0
676,971 + +0.2
676,971 + -3.0
676,972 - -0.9
677,086 + PfGW456L13_585 0.14 +1.5
677,087 - PfGW456L13_585 0.14 +0.8
677,087 - PfGW456L13_585 0.14 -1.0
677,170 + PfGW456L13_585 0.19 -1.3
677,170 + PfGW456L13_585 0.19 -0.4
677,170 + PfGW456L13_585 0.19 +0.4
677,171 - PfGW456L13_585 0.19 +0.7
677,191 + PfGW456L13_585 0.20 -1.4
677,191 + PfGW456L13_585 0.20 -0.5
677,191 + PfGW456L13_585 0.20 -1.2
677,192 - PfGW456L13_585 0.20 -1.1
677,192 - PfGW456L13_585 0.20 -0.9
677,192 - PfGW456L13_585 0.20 +0.3
677,192 - PfGW456L13_585 0.20 +0.6
677,192 - PfGW456L13_585 0.20 +1.9
677,192 - PfGW456L13_585 0.20 +1.7
677,262 - PfGW456L13_585 0.24 +0.1
677,301 + PfGW456L13_585 0.26 +3.9
677,302 - PfGW456L13_585 0.26 -1.2
677,302 - PfGW456L13_585 0.26 +0.2
677,585 + PfGW456L13_585 0.42 -0.4
677,585 + PfGW456L13_585 0.42 -1.0
677,585 + PfGW456L13_585 0.42 +0.7
677,585 + +2.3
677,585 + PfGW456L13_585 0.42 +3.3
677,585 + PfGW456L13_585 0.42 +0.3
677,585 + PfGW456L13_585 0.42 -0.4
677,585 + PfGW456L13_585 0.42 -1.6
677,585 + PfGW456L13_585 0.42 -0.1
677,585 + PfGW456L13_585 0.42 -2.4
677,585 + PfGW456L13_585 0.42 +1.3
677,585 + PfGW456L13_585 0.42 -2.5
677,586 - PfGW456L13_585 0.42 -0.1
677,586 - PfGW456L13_585 0.42 -1.9
677,586 - PfGW456L13_585 0.42 -0.2
677,586 - PfGW456L13_585 0.42 -1.3
677,586 - PfGW456L13_585 0.42 +1.0
677,586 - PfGW456L13_585 0.42 +0.2
677,586 - PfGW456L13_585 0.42 -0.1
677,586 - PfGW456L13_585 0.42 +0.4
677,586 - PfGW456L13_585 0.42 +0.3
677,586 - PfGW456L13_585 0.42 -1.5
677,586 - PfGW456L13_585 0.42 +1.1
677,586 - PfGW456L13_585 0.42 +0.2
677,586 - PfGW456L13_585 0.42 -0.6
677,586 - PfGW456L13_585 0.42 -2.4
677,685 + PfGW456L13_585 0.48 +0.3
677,745 + PfGW456L13_585 0.51 +0.1
677,867 - PfGW456L13_585 0.58 +1.5
677,867 - PfGW456L13_585 0.58 +0.1
677,901 + PfGW456L13_585 0.60 -0.7
677,901 + PfGW456L13_585 0.60 +0.4
677,902 - PfGW456L13_585 0.60 +0.4
678,444 + PfGW456L13_585 0.90 -1.2
678,444 + PfGW456L13_585 0.90 +0.8
678,444 + PfGW456L13_585 0.90 -1.5
678,445 - PfGW456L13_585 0.90 -0.5
678,445 - PfGW456L13_585 0.90 +2.7
678,445 - PfGW456L13_585 0.90 +0.2
678,445 - PfGW456L13_585 0.90 +1.6
678,445 - PfGW456L13_585 0.90 -0.1
678,451 + +0.8
678,451 + +0.6
678,574 + +0.1
678,574 + -1.3
678,575 - -0.3
678,575 - -0.7
678,604 + +1.1
678,604 + +0.8
678,604 + -1.3
678,604 + -0.6
678,604 + -0.1
678,604 + -1.9
678,604 + +0.3
678,605 - -0.4
678,605 - +1.0
678,605 - -2.0
678,622 + +0.0
678,623 - -0.4
678,679 + +0.3
678,835 + PfGW456L13_586 0.13 -1.4
678,930 + PfGW456L13_586 0.20 -0.4
678,931 - PfGW456L13_586 0.20 -1.7
678,945 + PfGW456L13_586 0.21 -1.0
679,158 + PfGW456L13_586 0.35 +0.5
679,158 + PfGW456L13_586 0.35 +0.2
679,158 + PfGW456L13_586 0.35 +0.2
679,158 + PfGW456L13_586 0.35 -0.2
679,158 + PfGW456L13_586 0.35 -0.5
679,158 + PfGW456L13_586 0.35 -0.4
679,158 + PfGW456L13_586 0.35 -0.5
679,158 + PfGW456L13_586 0.35 -0.3
679,158 + PfGW456L13_586 0.35 +0.4
679,158 + PfGW456L13_586 0.35 -1.1
679,158 + PfGW456L13_586 0.35 +1.2
679,158 + PfGW456L13_586 0.35 +1.3
679,158 + PfGW456L13_586 0.35 +0.3
679,158 + PfGW456L13_586 0.35 -0.1
679,158 + PfGW456L13_586 0.35 +0.3
679,158 + PfGW456L13_586 0.35 +0.7
679,158 + PfGW456L13_586 0.35 +0.5
679,158 + PfGW456L13_586 0.35 +0.3
679,158 + PfGW456L13_586 0.35 -0.4
679,159 - PfGW456L13_586 0.35 +0.8
679,159 - PfGW456L13_586 0.35 +0.3
679,159 - PfGW456L13_586 0.35 +0.2
679,159 - PfGW456L13_586 0.35 +0.9
679,159 - PfGW456L13_586 0.35 -1.1
679,159 - PfGW456L13_586 0.35 -1.7
679,159 - PfGW456L13_586 0.35 +0.0
679,159 - PfGW456L13_586 0.35 -0.9
679,159 - PfGW456L13_586 0.35 -0.1
679,159 - PfGW456L13_586 0.35 -0.9
679,159 - PfGW456L13_586 0.35 +0.5
679,365 + PfGW456L13_586 0.48 +0.0
679,366 - PfGW456L13_586 0.48 -1.1
679,366 - PfGW456L13_586 0.48 -1.0
679,463 + PfGW456L13_586 0.55 -0.9
679,463 + PfGW456L13_586 0.55 +1.4
679,463 + PfGW456L13_586 0.55 +1.2
679,463 + PfGW456L13_586 0.55 +1.4
679,463 + PfGW456L13_586 0.55 -1.2
679,463 + PfGW456L13_586 0.55 -1.0
679,463 + PfGW456L13_586 0.55 -1.0
679,463 + PfGW456L13_586 0.55 -0.3
679,464 - PfGW456L13_586 0.55 +0.1
679,514 - PfGW456L13_586 0.58 +0.9
679,551 + PfGW456L13_586 0.60 -1.9
679,551 + PfGW456L13_586 0.60 -1.8
679,578 + PfGW456L13_586 0.62 -0.2
679,578 + PfGW456L13_586 0.62 -0.8
679,578 + PfGW456L13_586 0.62 +1.7
679,578 + PfGW456L13_586 0.62 +0.4
679,578 + PfGW456L13_586 0.62 +0.5
679,579 - +0.5
679,579 - PfGW456L13_586 0.62 +0.3
679,579 - PfGW456L13_586 0.62 +1.2
679,580 + PfGW456L13_586 0.62 +0.8
679,580 + PfGW456L13_586 0.62 +0.0
679,580 + PfGW456L13_586 0.62 -0.6
679,581 - PfGW456L13_586 0.62 +0.5
679,581 - PfGW456L13_586 0.62 +0.5
679,581 - PfGW456L13_586 0.62 +0.1

Or see this region's nucleotide sequence