Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_56

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_55 and PfGW456L13_56 are separated by 38 nucleotidesPfGW456L13_56 and PfGW456L13_57 are separated by 82 nucleotides PfGW456L13_55 - tRNA dihydrouridine synthase B (EC 1.-.-.-), at 64,894 to 65,904 _55 PfGW456L13_56 - DNA-binding protein Fis, at 65,943 to 66,221 _56 PfGW456L13_57 - IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3), at 66,304 to 67,911 _57 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1at 65.187 kb on + strand, within PfGW456L13_55at 65.187 kb on + strand, within PfGW456L13_55at 65.391 kb on + strand, within PfGW456L13_55at 65.431 kb on + strand, within PfGW456L13_55at 65.431 kb on + strand, within PfGW456L13_55at 65.431 kb on + strand, within PfGW456L13_55at 65.681 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.710 kb on + strand, within PfGW456L13_55at 65.817 kb on + strandat 65.817 kb on + strandat 65.863 kb on + strandat 65.863 kb on + strandat 65.863 kb on + strandat 65.923 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strandat 66.219 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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65,187 + PfGW456L13_55 0.29 +0.5
65,187 + PfGW456L13_55 0.29 -0.4
65,391 + PfGW456L13_55 0.49 +0.6
65,431 + PfGW456L13_55 0.53 -0.1
65,431 + PfGW456L13_55 0.53 +0.1
65,431 + PfGW456L13_55 0.53 -0.6
65,681 + PfGW456L13_55 0.78 +1.1
65,710 + PfGW456L13_55 0.81 -1.3
65,710 + PfGW456L13_55 0.81 +0.3
65,710 + PfGW456L13_55 0.81 +0.1
65,710 + PfGW456L13_55 0.81 +0.5
65,710 + PfGW456L13_55 0.81 +1.2
65,710 + PfGW456L13_55 0.81 -1.0
65,710 + PfGW456L13_55 0.81 -1.6
65,710 + PfGW456L13_55 0.81 +0.2
65,710 + PfGW456L13_55 0.81 +1.1
65,710 + PfGW456L13_55 0.81 +0.7
65,710 + PfGW456L13_55 0.81 +1.1
65,710 + PfGW456L13_55 0.81 -3.1
65,817 + -0.8
65,817 + -0.9
65,863 + -1.1
65,863 + +0.2
65,863 + +1.4
65,923 + +1.4
66,219 + -1.6
66,219 + +1.5
66,219 + -1.7
66,219 + +0.2
66,219 + -1.8
66,219 + +1.2
66,219 + +0.3
66,219 + -0.0

Or see this region's nucleotide sequence