Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_523

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_522 and PfGW456L13_523 overlap by 4 nucleotidesPfGW456L13_523 and PfGW456L13_524 are separated by 79 nucleotides PfGW456L13_522 - Probable membrane-fusion protein, at 601,702 to 603,021 _522 PfGW456L13_523 - Membrane-fusion protein, at 603,018 to 603,797 _523 PfGW456L13_524 - Outer membrane component of tripartite multidrug resistance system, at 603,877 to 605,454 _524 Position (kb) 603 604Strain fitness (log2 ratio) -2 -1 0 1 2 3at 602.091 kb on + strand, within PfGW456L13_522at 602.091 kb on + strand, within PfGW456L13_522at 602.092 kb on - strand, within PfGW456L13_522at 602.141 kb on + strand, within PfGW456L13_522at 602.142 kb on - strand, within PfGW456L13_522at 602.434 kb on + strand, within PfGW456L13_522at 602.435 kb on - strand, within PfGW456L13_522at 602.558 kb on + strand, within PfGW456L13_522at 602.558 kb on + strand, within PfGW456L13_522at 602.558 kb on + strand, within PfGW456L13_522at 602.558 kb on + strand, within PfGW456L13_522at 602.558 kb on + strand, within PfGW456L13_522at 602.558 kb on + strand, within PfGW456L13_522at 602.558 kb on + strand, within PfGW456L13_522at 602.559 kb on - strand, within PfGW456L13_522at 602.559 kb on - strand, within PfGW456L13_522at 602.559 kb on - strand, within PfGW456L13_522at 602.559 kb on - strand, within PfGW456L13_522at 602.562 kb on + strand, within PfGW456L13_522at 602.562 kb on + strand, within PfGW456L13_522at 602.563 kb on - strand, within PfGW456L13_522at 602.563 kb on - strand, within PfGW456L13_522at 602.563 kb on - strand, within PfGW456L13_522at 602.563 kb on - strand, within PfGW456L13_522at 602.803 kb on + strand, within PfGW456L13_522at 602.804 kb on - strand, within PfGW456L13_522at 602.804 kb on - strand, within PfGW456L13_522at 602.829 kb on + strand, within PfGW456L13_522at 602.830 kb on - strand, within PfGW456L13_522at 602.830 kb on - strand, within PfGW456L13_522at 602.867 kb on - strand, within PfGW456L13_522at 602.922 kb on - strandat 602.986 kb on + strandat 603.291 kb on + strand, within PfGW456L13_523at 603.292 kb on - strand, within PfGW456L13_523at 603.309 kb on + strand, within PfGW456L13_523at 603.310 kb on - strand, within PfGW456L13_523at 603.310 kb on - strand, within PfGW456L13_523at 603.310 kb on - strand, within PfGW456L13_523at 603.376 kb on + strand, within PfGW456L13_523at 603.376 kb on + strand, within PfGW456L13_523at 603.376 kb on + strand, within PfGW456L13_523at 603.376 kb on + strand, within PfGW456L13_523at 603.376 kb on + strand, within PfGW456L13_523at 603.376 kb on + strand, within PfGW456L13_523at 603.376 kb on + strand, within PfGW456L13_523at 603.376 kb on + strand, within PfGW456L13_523at 603.377 kb on - strand, within PfGW456L13_523at 603.377 kb on - strand, within PfGW456L13_523at 603.377 kb on - strand, within PfGW456L13_523at 603.377 kb on - strand, within PfGW456L13_523at 603.532 kb on + strand, within PfGW456L13_523at 603.634 kb on - strand, within PfGW456L13_523at 603.658 kb on - strand, within PfGW456L13_523at 603.829 kb on - strandat 603.829 kb on - strandat 603.843 kb on + strandat 603.875 kb on + strandat 603.875 kb on + strandat 603.876 kb on - strandat 603.878 kb on + strandat 603.879 kb on - strandat 603.938 kb on + strandat 603.939 kb on - strandat 603.939 kb on - strandat 603.939 kb on - strandat 604.055 kb on + strand, within PfGW456L13_524at 604.055 kb on + strand, within PfGW456L13_524at 604.055 kb on + strand, within PfGW456L13_524at 604.055 kb on + strand, within PfGW456L13_524at 604.055 kb on + strand, within PfGW456L13_524at 604.055 kb on + strand, within PfGW456L13_524at 604.055 kb on + strand, within PfGW456L13_524at 604.056 kb on - strand, within PfGW456L13_524at 604.056 kb on - strand, within PfGW456L13_524at 604.056 kb on - strand, within PfGW456L13_524at 604.056 kb on - strand, within PfGW456L13_524at 604.056 kb on - strand, within PfGW456L13_524at 604.056 kb on - strand, within PfGW456L13_524at 604.096 kb on + strand, within PfGW456L13_524at 604.097 kb on - strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.139 kb on + strand, within PfGW456L13_524at 604.140 kb on - strand, within PfGW456L13_524at 604.140 kb on - strand, within PfGW456L13_524at 604.140 kb on - strand, within PfGW456L13_524at 604.193 kb on + strand, within PfGW456L13_524at 604.193 kb on + strand, within PfGW456L13_524at 604.193 kb on + strand, within PfGW456L13_524at 604.193 kb on + strand, within PfGW456L13_524at 604.193 kb on + strand, within PfGW456L13_524at 604.194 kb on - strand, within PfGW456L13_524at 604.194 kb on - strand, within PfGW456L13_524at 604.402 kb on - strand, within PfGW456L13_524at 604.525 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.778 kb on + strand, within PfGW456L13_524at 604.779 kb on - strand, within PfGW456L13_524at 604.779 kb on - strand, within PfGW456L13_524at 604.779 kb on - strand, within PfGW456L13_524

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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602,091 + PfGW456L13_522 0.29 +1.0
602,091 + PfGW456L13_522 0.29 -0.4
602,092 - PfGW456L13_522 0.30 -0.2
602,141 + PfGW456L13_522 0.33 +0.2
602,142 - PfGW456L13_522 0.33 +1.6
602,434 + PfGW456L13_522 0.55 +0.1
602,435 - PfGW456L13_522 0.56 -0.4
602,558 + PfGW456L13_522 0.65 +0.6
602,558 + PfGW456L13_522 0.65 +0.1
602,558 + PfGW456L13_522 0.65 +0.2
602,558 + PfGW456L13_522 0.65 -0.1
602,558 + PfGW456L13_522 0.65 +0.9
602,558 + PfGW456L13_522 0.65 -1.0
602,558 + PfGW456L13_522 0.65 -0.8
602,559 - PfGW456L13_522 0.65 -0.4
602,559 - PfGW456L13_522 0.65 +0.5
602,559 - PfGW456L13_522 0.65 -0.5
602,559 - PfGW456L13_522 0.65 -0.3
602,562 + PfGW456L13_522 0.65 -0.2
602,562 + PfGW456L13_522 0.65 -0.7
602,563 - PfGW456L13_522 0.65 +0.3
602,563 - PfGW456L13_522 0.65 +0.1
602,563 - PfGW456L13_522 0.65 -0.4
602,563 - PfGW456L13_522 0.65 -0.4
602,803 + PfGW456L13_522 0.83 +0.0
602,804 - PfGW456L13_522 0.83 -1.6
602,804 - PfGW456L13_522 0.83 +1.0
602,829 + PfGW456L13_522 0.85 -0.0
602,830 - PfGW456L13_522 0.85 +1.3
602,830 - PfGW456L13_522 0.85 -0.6
602,867 - PfGW456L13_522 0.88 -1.3
602,922 - +2.3
602,986 + -0.3
603,291 + PfGW456L13_523 0.35 +0.1
603,292 - PfGW456L13_523 0.35 +0.2
603,309 + PfGW456L13_523 0.37 +1.5
603,310 - PfGW456L13_523 0.37 -0.3
603,310 - PfGW456L13_523 0.37 +0.5
603,310 - PfGW456L13_523 0.37 -0.8
603,376 + PfGW456L13_523 0.46 +1.3
603,376 + PfGW456L13_523 0.46 -1.1
603,376 + PfGW456L13_523 0.46 -0.4
603,376 + PfGW456L13_523 0.46 +3.1
603,376 + PfGW456L13_523 0.46 +0.5
603,376 + PfGW456L13_523 0.46 -0.3
603,376 + PfGW456L13_523 0.46 -0.4
603,376 + PfGW456L13_523 0.46 +0.1
603,377 - PfGW456L13_523 0.46 +1.3
603,377 - PfGW456L13_523 0.46 +1.0
603,377 - PfGW456L13_523 0.46 +0.7
603,377 - PfGW456L13_523 0.46 -0.7
603,532 + PfGW456L13_523 0.66 -2.1
603,634 - PfGW456L13_523 0.79 +1.4
603,658 - PfGW456L13_523 0.82 -0.9
603,829 - +0.4
603,829 - -0.2
603,843 + +0.7
603,875 + +0.7
603,875 + +0.9
603,876 - +2.0
603,878 + -0.2
603,879 - -0.5
603,938 + +0.6
603,939 - -0.5
603,939 - +0.5
603,939 - +1.1
604,055 + PfGW456L13_524 0.11 +0.5
604,055 + PfGW456L13_524 0.11 +2.8
604,055 + PfGW456L13_524 0.11 +2.3
604,055 + PfGW456L13_524 0.11 +1.2
604,055 + PfGW456L13_524 0.11 +0.4
604,055 + PfGW456L13_524 0.11 -0.8
604,055 + PfGW456L13_524 0.11 -0.4
604,056 - PfGW456L13_524 0.11 +0.4
604,056 - PfGW456L13_524 0.11 +0.0
604,056 - PfGW456L13_524 0.11 -1.9
604,056 - PfGW456L13_524 0.11 -1.8
604,056 - PfGW456L13_524 0.11 +1.4
604,056 - PfGW456L13_524 0.11 -0.1
604,096 + PfGW456L13_524 0.14 +0.9
604,097 - PfGW456L13_524 0.14 -1.8
604,139 + PfGW456L13_524 0.17 -1.0
604,139 + PfGW456L13_524 0.17 +1.9
604,139 + PfGW456L13_524 0.17 -0.0
604,139 + PfGW456L13_524 0.17 -0.8
604,139 + PfGW456L13_524 0.17 -2.3
604,139 + PfGW456L13_524 0.17 +0.8
604,139 + PfGW456L13_524 0.17 +1.0
604,139 + PfGW456L13_524 0.17 +0.7
604,139 + PfGW456L13_524 0.17 +2.0
604,139 + PfGW456L13_524 0.17 +1.2
604,139 + PfGW456L13_524 0.17 -0.5
604,139 + PfGW456L13_524 0.17 +0.4
604,140 - PfGW456L13_524 0.17 -0.2
604,140 - PfGW456L13_524 0.17 -0.2
604,140 - PfGW456L13_524 0.17 +0.3
604,193 + PfGW456L13_524 0.20 +0.1
604,193 + PfGW456L13_524 0.20 +0.5
604,193 + PfGW456L13_524 0.20 +1.3
604,193 + PfGW456L13_524 0.20 -1.5
604,193 + PfGW456L13_524 0.20 +1.0
604,194 - PfGW456L13_524 0.20 -0.4
604,194 - PfGW456L13_524 0.20 +1.5
604,402 - PfGW456L13_524 0.33 -0.4
604,525 + PfGW456L13_524 0.41 +0.3
604,778 + PfGW456L13_524 0.57 +0.3
604,778 + PfGW456L13_524 0.57 +0.1
604,778 + PfGW456L13_524 0.57 -0.8
604,778 + PfGW456L13_524 0.57 -0.1
604,778 + PfGW456L13_524 0.57 -0.7
604,778 + PfGW456L13_524 0.57 +0.3
604,778 + PfGW456L13_524 0.57 +1.0
604,778 + PfGW456L13_524 0.57 +0.4
604,779 - PfGW456L13_524 0.57 -0.1
604,779 - PfGW456L13_524 0.57 +0.9
604,779 - PfGW456L13_524 0.57 +1.1

Or see this region's nucleotide sequence