Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5189

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1577 and PfGW456L13_5189 are separated by 49 nucleotidesPfGW456L13_5189 and PfGW456L13_1578 are separated by 36 nucleotidesPfGW456L13_1578 and PfGW456L13_1579 are separated by 1 nucleotides PfGW456L13_1577 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 1,741,214 to 1,742,155 _1577 PfGW456L13_5189 - tRNA-Gln-TTG, at 1,742,205 to 1,742,276 _5189 PfGW456L13_1578 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 1,742,313 to 1,743,164 _1578 PfGW456L13_1579 - Outer membrane lipoprotein LolB precursor, at 1,743,166 to 1,743,783 _1579 Position (kb) 1742 1743Strain fitness (log2 ratio) -1 0 1at 1742.195 kb on - strandat 1742.195 kb on - strandat 1742.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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1,742,195 - +0.4
1,742,195 - -0.5
1,742,279 - -0.6

Or see this region's nucleotide sequence