Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4891

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4890 and PfGW456L13_4891 are separated by 24 nucleotidesPfGW456L13_4891 and PfGW456L13_4892 are separated by 6 nucleotides PfGW456L13_4890 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 5,461,227 to 5,462,870 _4890 PfGW456L13_4891 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 5,462,895 to 5,464,673 _4891 PfGW456L13_4892 - FIG005548: transport protein, at 5,464,680 to 5,467,199 _4892 Position (kb) 5462 5463 5464 5465Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5462.098 kb on + strandat 5462.131 kb on + strand, within PfGW456L13_4890at 5462.179 kb on + strand, within PfGW456L13_4890at 5462.179 kb on + strand, within PfGW456L13_4890at 5462.179 kb on + strand, within PfGW456L13_4890at 5462.179 kb on + strand, within PfGW456L13_4890at 5462.179 kb on + strand, within PfGW456L13_4890at 5462.179 kb on + strand, within PfGW456L13_4890at 5462.179 kb on + strand, within PfGW456L13_4890at 5462.179 kb on + strand, within PfGW456L13_4890at 5462.180 kb on + strand, within PfGW456L13_4890at 5462.180 kb on - strand, within PfGW456L13_4890at 5462.180 kb on - strand, within PfGW456L13_4890at 5462.180 kb on - strand, within PfGW456L13_4890at 5462.180 kb on - strand, within PfGW456L13_4890at 5462.180 kb on - strand, within PfGW456L13_4890at 5462.180 kb on - strand, within PfGW456L13_4890at 5462.180 kb on - strand, within PfGW456L13_4890at 5462.180 kb on - strand, within PfGW456L13_4890at 5462.216 kb on - strand, within PfGW456L13_4890at 5462.275 kb on + strand, within PfGW456L13_4890at 5462.275 kb on + strand, within PfGW456L13_4890at 5462.276 kb on - strand, within PfGW456L13_4890at 5462.276 kb on - strand, within PfGW456L13_4890at 5462.311 kb on + strand, within PfGW456L13_4890at 5462.312 kb on - strand, within PfGW456L13_4890at 5462.356 kb on + strand, within PfGW456L13_4890at 5462.446 kb on + strand, within PfGW456L13_4890at 5462.629 kb on + strand, within PfGW456L13_4890at 5462.734 kb on + strandat 5462.734 kb on + strandat 5462.741 kb on - strandat 5462.741 kb on - strandat 5462.783 kb on - strandat 5462.824 kb on + strandat 5462.830 kb on + strandat 5462.830 kb on + strandat 5462.831 kb on - strandat 5462.874 kb on + strandat 5462.920 kb on + strandat 5462.989 kb on + strandat 5462.989 kb on + strandat 5463.019 kb on + strandat 5463.019 kb on + strandat 5463.020 kb on - strandat 5463.076 kb on + strand, within PfGW456L13_4891at 5463.076 kb on + strand, within PfGW456L13_4891at 5463.076 kb on + strand, within PfGW456L13_4891at 5463.076 kb on + strand, within PfGW456L13_4891at 5463.076 kb on + strand, within PfGW456L13_4891at 5463.076 kb on + strand, within PfGW456L13_4891at 5463.076 kb on + strand, within PfGW456L13_4891at 5463.076 kb on + strand, within PfGW456L13_4891at 5463.076 kb on + strand, within PfGW456L13_4891at 5463.076 kb on + strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.077 kb on - strand, within PfGW456L13_4891at 5463.082 kb on + strand, within PfGW456L13_4891at 5463.083 kb on - strand, within PfGW456L13_4891at 5463.110 kb on - strand, within PfGW456L13_4891at 5463.352 kb on + strand, within PfGW456L13_4891at 5463.353 kb on - strand, within PfGW456L13_4891at 5463.353 kb on - strand, within PfGW456L13_4891at 5463.353 kb on - strand, within PfGW456L13_4891at 5463.353 kb on - strand, within PfGW456L13_4891at 5463.353 kb on - strand, within PfGW456L13_4891at 5463.409 kb on + strand, within PfGW456L13_4891at 5463.501 kb on + strand, within PfGW456L13_4891at 5463.544 kb on + strand, within PfGW456L13_4891at 5463.544 kb on + strand, within PfGW456L13_4891at 5463.544 kb on + strand, within PfGW456L13_4891at 5463.574 kb on + strand, within PfGW456L13_4891at 5463.574 kb on + strand, within PfGW456L13_4891at 5463.574 kb on + strand, within PfGW456L13_4891at 5463.790 kb on + strand, within PfGW456L13_4891at 5463.790 kb on + strand, within PfGW456L13_4891at 5463.790 kb on + strand, within PfGW456L13_4891at 5463.790 kb on + strand, within PfGW456L13_4891at 5463.791 kb on - strand, within PfGW456L13_4891at 5463.791 kb on - strand, within PfGW456L13_4891at 5463.791 kb on - strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.105 kb on + strand, within PfGW456L13_4891at 5464.106 kb on - strand, within PfGW456L13_4891at 5464.106 kb on - strand, within PfGW456L13_4891at 5464.106 kb on - strand, within PfGW456L13_4891at 5464.106 kb on - strand, within PfGW456L13_4891at 5464.207 kb on + strand, within PfGW456L13_4891at 5464.207 kb on + strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.208 kb on - strand, within PfGW456L13_4891at 5464.223 kb on - strand, within PfGW456L13_4891at 5464.223 kb on - strand, within PfGW456L13_4891at 5464.423 kb on + strand, within PfGW456L13_4891at 5464.423 kb on + strand, within PfGW456L13_4891at 5464.424 kb on - strand, within PfGW456L13_4891at 5464.663 kb on + strandat 5464.663 kb on + strandat 5464.664 kb on - strandat 5464.664 kb on - strandat 5464.664 kb on - strandat 5464.681 kb on + strandat 5464.682 kb on - strandat 5464.789 kb on + strandat 5464.790 kb on - strandat 5465.026 kb on + strand, within PfGW456L13_4892at 5465.026 kb on + strand, within PfGW456L13_4892at 5465.027 kb on - strand, within PfGW456L13_4892at 5465.027 kb on - strand, within PfGW456L13_4892at 5465.027 kb on - strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.215 kb on + strand, within PfGW456L13_4892at 5465.216 kb on - strand, within PfGW456L13_4892at 5465.216 kb on - strand, within PfGW456L13_4892at 5465.216 kb on - strand, within PfGW456L13_4892at 5465.216 kb on - strand, within PfGW456L13_4892at 5465.221 kb on + strand, within PfGW456L13_4892at 5465.221 kb on + strand, within PfGW456L13_4892at 5465.221 kb on + strand, within PfGW456L13_4892at 5465.221 kb on + strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.222 kb on - strand, within PfGW456L13_4892at 5465.467 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.521 kb on + strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.522 kb on - strand, within PfGW456L13_4892at 5465.525 kb on + strand, within PfGW456L13_4892at 5465.525 kb on + strand, within PfGW456L13_4892at 5465.526 kb on - strand, within PfGW456L13_4892at 5465.526 kb on - strand, within PfGW456L13_4892at 5465.526 kb on - strand, within PfGW456L13_4892at 5465.632 kb on + strand, within PfGW456L13_4892at 5465.632 kb on + strand, within PfGW456L13_4892at 5465.632 kb on + strand, within PfGW456L13_4892at 5465.633 kb on - strand, within PfGW456L13_4892

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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5,462,098 + +2.3
5,462,131 + PfGW456L13_4890 0.55 -2.0
5,462,179 + PfGW456L13_4890 0.58 -0.2
5,462,179 + PfGW456L13_4890 0.58 +0.8
5,462,179 + PfGW456L13_4890 0.58 +0.8
5,462,179 + PfGW456L13_4890 0.58 +1.5
5,462,179 + PfGW456L13_4890 0.58 +0.1
5,462,179 + PfGW456L13_4890 0.58 -0.3
5,462,179 + PfGW456L13_4890 0.58 +0.6
5,462,179 + PfGW456L13_4890 0.58 +0.2
5,462,180 + PfGW456L13_4890 0.58 +1.7
5,462,180 - PfGW456L13_4890 0.58 +0.8
5,462,180 - PfGW456L13_4890 0.58 -0.5
5,462,180 - PfGW456L13_4890 0.58 +0.4
5,462,180 - PfGW456L13_4890 0.58 +0.2
5,462,180 - PfGW456L13_4890 0.58 -0.6
5,462,180 - PfGW456L13_4890 0.58 +1.6
5,462,180 - PfGW456L13_4890 0.58 -0.4
5,462,180 - PfGW456L13_4890 0.58 -1.9
5,462,216 - PfGW456L13_4890 0.60 +0.5
5,462,275 + PfGW456L13_4890 0.64 -0.2
5,462,275 + PfGW456L13_4890 0.64 -2.5
5,462,276 - PfGW456L13_4890 0.64 -1.2
5,462,276 - PfGW456L13_4890 0.64 -1.5
5,462,311 + PfGW456L13_4890 0.66 +0.5
5,462,312 - PfGW456L13_4890 0.66 +0.0
5,462,356 + PfGW456L13_4890 0.69 -0.5
5,462,446 + PfGW456L13_4890 0.74 +1.6
5,462,629 + PfGW456L13_4890 0.85 +1.1
5,462,734 + +0.7
5,462,734 + +0.6
5,462,741 - -0.9
5,462,741 - -0.9
5,462,783 - -0.3
5,462,824 + -2.8
5,462,830 + -1.2
5,462,830 + +0.5
5,462,831 - -0.1
5,462,874 + -1.4
5,462,920 + -0.4
5,462,989 + +0.5
5,462,989 + -0.8
5,463,019 + +0.2
5,463,019 + +0.4
5,463,020 - +1.3
5,463,076 + PfGW456L13_4891 0.10 -0.2
5,463,076 + PfGW456L13_4891 0.10 -0.6
5,463,076 + PfGW456L13_4891 0.10 +0.4
5,463,076 + PfGW456L13_4891 0.10 -2.4
5,463,076 + PfGW456L13_4891 0.10 +0.4
5,463,076 + PfGW456L13_4891 0.10 -1.6
5,463,076 + PfGW456L13_4891 0.10 -0.3
5,463,076 + PfGW456L13_4891 0.10 -0.4
5,463,076 + PfGW456L13_4891 0.10 -0.3
5,463,076 + PfGW456L13_4891 0.10 -0.5
5,463,077 - PfGW456L13_4891 0.10 -0.2
5,463,077 - PfGW456L13_4891 0.10 +1.5
5,463,077 - PfGW456L13_4891 0.10 -0.5
5,463,077 - PfGW456L13_4891 0.10 +0.8
5,463,077 - PfGW456L13_4891 0.10 -0.0
5,463,077 - PfGW456L13_4891 0.10 -2.1
5,463,077 - PfGW456L13_4891 0.10 +1.4
5,463,077 - PfGW456L13_4891 0.10 -0.2
5,463,077 - PfGW456L13_4891 0.10 +0.9
5,463,077 - PfGW456L13_4891 0.10 -0.6
5,463,077 - PfGW456L13_4891 0.10 -0.5
5,463,077 - PfGW456L13_4891 0.10 +1.3
5,463,077 - PfGW456L13_4891 0.10 +0.3
5,463,082 + PfGW456L13_4891 0.11 +1.6
5,463,083 - PfGW456L13_4891 0.11 +0.8
5,463,110 - PfGW456L13_4891 0.12 -0.7
5,463,352 + PfGW456L13_4891 0.26 -0.7
5,463,353 - PfGW456L13_4891 0.26 -0.1
5,463,353 - PfGW456L13_4891 0.26 -0.3
5,463,353 - PfGW456L13_4891 0.26 -2.0
5,463,353 - PfGW456L13_4891 0.26 -0.5
5,463,353 - PfGW456L13_4891 0.26 -1.0
5,463,409 + PfGW456L13_4891 0.29 +1.5
5,463,501 + PfGW456L13_4891 0.34 -1.2
5,463,544 + PfGW456L13_4891 0.36 +0.2
5,463,544 + PfGW456L13_4891 0.36 -0.5
5,463,544 + PfGW456L13_4891 0.36 +0.0
5,463,574 + PfGW456L13_4891 0.38 -0.3
5,463,574 + PfGW456L13_4891 0.38 -1.7
5,463,574 + PfGW456L13_4891 0.38 +0.8
5,463,790 + PfGW456L13_4891 0.50 +1.4
5,463,790 + PfGW456L13_4891 0.50 +1.0
5,463,790 + PfGW456L13_4891 0.50 +0.0
5,463,790 + PfGW456L13_4891 0.50 -0.0
5,463,791 - PfGW456L13_4891 0.50 +1.2
5,463,791 - PfGW456L13_4891 0.50 +1.1
5,463,791 - PfGW456L13_4891 0.50 +0.1
5,464,105 + PfGW456L13_4891 0.68 -1.4
5,464,105 + PfGW456L13_4891 0.68 +0.8
5,464,105 + PfGW456L13_4891 0.68 +0.4
5,464,105 + PfGW456L13_4891 0.68 -1.4
5,464,105 + PfGW456L13_4891 0.68 -0.8
5,464,105 + PfGW456L13_4891 0.68 -2.7
5,464,105 + PfGW456L13_4891 0.68 +1.3
5,464,106 - PfGW456L13_4891 0.68 +1.1
5,464,106 - PfGW456L13_4891 0.68 +2.4
5,464,106 - PfGW456L13_4891 0.68 +1.8
5,464,106 - PfGW456L13_4891 0.68 +1.2
5,464,207 + PfGW456L13_4891 0.74 -1.5
5,464,207 + PfGW456L13_4891 0.74 -0.5
5,464,208 - PfGW456L13_4891 0.74 -0.0
5,464,208 - PfGW456L13_4891 0.74 +1.4
5,464,208 - PfGW456L13_4891 0.74 -0.0
5,464,208 - PfGW456L13_4891 0.74 -0.2
5,464,208 - PfGW456L13_4891 0.74 -2.0
5,464,208 - PfGW456L13_4891 0.74 +0.0
5,464,208 - PfGW456L13_4891 0.74 +0.6
5,464,208 - PfGW456L13_4891 0.74 +1.2
5,464,208 - PfGW456L13_4891 0.74 -0.4
5,464,223 - PfGW456L13_4891 0.75 +0.2
5,464,223 - PfGW456L13_4891 0.75 -2.0
5,464,423 + PfGW456L13_4891 0.86 -0.1
5,464,423 + PfGW456L13_4891 0.86 -0.9
5,464,424 - PfGW456L13_4891 0.86 -0.2
5,464,663 + -1.7
5,464,663 + +0.2
5,464,664 - -1.0
5,464,664 - -0.9
5,464,664 - -1.5
5,464,681 + -1.8
5,464,682 - +0.1
5,464,789 + -1.0
5,464,790 - -0.5
5,465,026 + PfGW456L13_4892 0.14 -1.7
5,465,026 + PfGW456L13_4892 0.14 -1.4
5,465,027 - PfGW456L13_4892 0.14 +0.3
5,465,027 - PfGW456L13_4892 0.14 -1.5
5,465,027 - PfGW456L13_4892 0.14 -1.5
5,465,215 + PfGW456L13_4892 0.21 -1.9
5,465,215 + PfGW456L13_4892 0.21 -1.2
5,465,215 + PfGW456L13_4892 0.21 +2.4
5,465,215 + PfGW456L13_4892 0.21 -0.4
5,465,215 + PfGW456L13_4892 0.21 -1.3
5,465,215 + PfGW456L13_4892 0.21 +1.3
5,465,216 - PfGW456L13_4892 0.21 -0.7
5,465,216 - PfGW456L13_4892 0.21 -2.3
5,465,216 - PfGW456L13_4892 0.21 -1.0
5,465,216 - PfGW456L13_4892 0.21 -0.1
5,465,221 + PfGW456L13_4892 0.21 +0.7
5,465,221 + PfGW456L13_4892 0.21 -1.6
5,465,221 + PfGW456L13_4892 0.21 -0.3
5,465,221 + PfGW456L13_4892 0.21 -0.8
5,465,222 - PfGW456L13_4892 0.22 -0.4
5,465,222 - PfGW456L13_4892 0.22 +1.9
5,465,222 - PfGW456L13_4892 0.22 -0.1
5,465,222 - PfGW456L13_4892 0.22 -0.1
5,465,222 - PfGW456L13_4892 0.22 -0.3
5,465,222 - PfGW456L13_4892 0.22 -2.1
5,465,222 - PfGW456L13_4892 0.22 -1.1
5,465,222 - PfGW456L13_4892 0.22 +0.5
5,465,467 + PfGW456L13_4892 0.31 -0.4
5,465,521 + PfGW456L13_4892 0.33 -0.1
5,465,521 + PfGW456L13_4892 0.33 -0.5
5,465,521 + PfGW456L13_4892 0.33 -1.4
5,465,521 + PfGW456L13_4892 0.33 +0.4
5,465,521 + PfGW456L13_4892 0.33 -0.3
5,465,521 + PfGW456L13_4892 0.33 -1.0
5,465,521 + PfGW456L13_4892 0.33 -0.1
5,465,521 + PfGW456L13_4892 0.33 +0.5
5,465,521 + PfGW456L13_4892 0.33 +0.3
5,465,521 + PfGW456L13_4892 0.33 -0.2
5,465,521 + PfGW456L13_4892 0.33 +0.8
5,465,522 - PfGW456L13_4892 0.33 +0.0
5,465,522 - PfGW456L13_4892 0.33 +0.0
5,465,522 - PfGW456L13_4892 0.33 -1.8
5,465,522 - PfGW456L13_4892 0.33 -2.5
5,465,522 - PfGW456L13_4892 0.33 -0.6
5,465,522 - PfGW456L13_4892 0.33 +1.2
5,465,525 + PfGW456L13_4892 0.34 -0.4
5,465,525 + PfGW456L13_4892 0.34 -1.4
5,465,526 - PfGW456L13_4892 0.34 -0.2
5,465,526 - PfGW456L13_4892 0.34 +0.2
5,465,526 - PfGW456L13_4892 0.34 -1.8
5,465,632 + PfGW456L13_4892 0.38 +0.1
5,465,632 + PfGW456L13_4892 0.38 +0.9
5,465,632 + PfGW456L13_4892 0.38 -0.9
5,465,633 - PfGW456L13_4892 0.38 +0.5

Or see this region's nucleotide sequence