Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4822 and PfGW456L13_4823 overlap by 4 nucleotides PfGW456L13_4823 and PfGW456L13_4824 are separated by 120 nucleotides PfGW456L13_4824 and PfGW456L13_4825 overlap by 4 nucleotides PfGW456L13_4825 and PfGW456L13_4826 are separated by 71 nucleotides
PfGW456L13_4822 - Mobile element protein, at 5,387,238 to 5,387,543
_4822
PfGW456L13_4823 - Mobile element protein, at 5,387,540 to 5,388,376
_4823
PfGW456L13_4824 - FIG00954164: hypothetical protein, at 5,388,497 to 5,388,712
_4824
PfGW456L13_4825 - carbonic anhydrase, family 3, at 5,388,709 to 5,389,233
_4825
PfGW456L13_4826 - Hypothetical nudix hydrolase YeaB, at 5,389,305 to 5,389,904
_4826
Position (kb) 5387
5388
5389 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5386.540 kb on + strand at 5386.717 kb on - strand at 5386.717 kb on - strand at 5387.187 kb on - strand at 5387.187 kb on - strand at 5388.400 kb on + strand at 5388.425 kb on + strand at 5388.425 kb on + strand at 5388.518 kb on + strand at 5388.518 kb on + strand at 5388.518 kb on + strand at 5388.518 kb on + strand at 5388.518 kb on + strand at 5388.519 kb on - strand, within PfGW456L13_4824 at 5388.519 kb on - strand, within PfGW456L13_4824 at 5388.519 kb on - strand, within PfGW456L13_4824 at 5388.519 kb on - strand, within PfGW456L13_4824 at 5388.670 kb on + strand, within PfGW456L13_4824 at 5388.671 kb on - strand, within PfGW456L13_4824 at 5388.671 kb on - strand, within PfGW456L13_4824 at 5388.671 kb on - strand, within PfGW456L13_4824 at 5388.688 kb on + strand, within PfGW456L13_4824 at 5388.740 kb on + strand at 5388.761 kb on + strand at 5388.761 kb on + strand at 5388.761 kb on + strand at 5388.761 kb on + strand at 5388.761 kb on + strand at 5388.761 kb on + strand at 5388.761 kb on + strand at 5388.762 kb on - strand, within PfGW456L13_4825 at 5388.762 kb on - strand, within PfGW456L13_4825 at 5388.762 kb on - strand, within PfGW456L13_4825 at 5388.956 kb on + strand, within PfGW456L13_4825 at 5388.957 kb on - strand, within PfGW456L13_4825 at 5388.957 kb on - strand, within PfGW456L13_4825 at 5388.957 kb on - strand, within PfGW456L13_4825 at 5388.957 kb on - strand, within PfGW456L13_4825 at 5388.957 kb on - strand, within PfGW456L13_4825 at 5389.226 kb on + strand at 5389.239 kb on + strand at 5389.239 kb on + strand at 5389.239 kb on + strand at 5389.239 kb on + strand at 5389.240 kb on - strand at 5389.240 kb on - strand at 5389.240 kb on - strand at 5389.240 kb on - strand at 5389.240 kb on - strand at 5389.240 kb on - strand at 5389.316 kb on + strand at 5389.317 kb on - strand at 5389.357 kb on + strand at 5389.357 kb on + strand at 5389.358 kb on - strand at 5389.358 kb on - strand at 5389.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 5,386,540 + -1.0 5,386,717 - +1.2 5,386,717 - -0.6 5,387,187 - +0.5 5,387,187 - -2.3 5,388,400 + -2.7 5,388,425 + -0.4 5,388,425 + +0.7 5,388,518 + -1.8 5,388,518 + -0.9 5,388,518 + -0.9 5,388,518 + +2.8 5,388,518 + +0.6 5,388,519 - PfGW456L13_4824 0.10 -0.2 5,388,519 - PfGW456L13_4824 0.10 +0.6 5,388,519 - PfGW456L13_4824 0.10 +1.2 5,388,519 - PfGW456L13_4824 0.10 +0.4 5,388,670 + PfGW456L13_4824 0.80 -0.8 5,388,671 - PfGW456L13_4824 0.81 -0.8 5,388,671 - PfGW456L13_4824 0.81 -0.7 5,388,671 - PfGW456L13_4824 0.81 -0.2 5,388,688 + PfGW456L13_4824 0.88 +0.4 5,388,740 + +0.8 5,388,761 + -1.3 5,388,761 + +2.1 5,388,761 + -1.4 5,388,761 + +0.4 5,388,761 + +0.2 5,388,761 + -0.1 5,388,761 + +0.5 5,388,762 - PfGW456L13_4825 0.10 +0.9 5,388,762 - PfGW456L13_4825 0.10 +0.4 5,388,762 - PfGW456L13_4825 0.10 +0.9 5,388,956 + PfGW456L13_4825 0.47 -1.2 5,388,957 - PfGW456L13_4825 0.47 +1.1 5,388,957 - PfGW456L13_4825 0.47 -0.1 5,388,957 - PfGW456L13_4825 0.47 +0.1 5,388,957 - PfGW456L13_4825 0.47 -0.1 5,388,957 - PfGW456L13_4825 0.47 -2.5 5,389,226 + -1.5 5,389,239 + +1.1 5,389,239 + +0.2 5,389,239 + +0.7 5,389,239 + +0.3 5,389,240 - +1.2 5,389,240 - +2.4 5,389,240 - -1.5 5,389,240 - +0.4 5,389,240 - -0.2 5,389,240 - +0.5 5,389,316 + -1.3 5,389,317 - -0.5 5,389,357 + -0.7 5,389,357 + -1.8 5,389,358 - +0.6 5,389,358 - +0.8 5,389,358 - +0.1
Or see this region's nucleotide sequence