Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4336 and PfGW456L13_4337 are separated by 3 nucleotides PfGW456L13_4337 and PfGW456L13_4338 are separated by 3 nucleotides PfGW456L13_4338 and PfGW456L13_4339 overlap by 4 nucleotides PfGW456L13_4339 and PfGW456L13_4340 overlap by 1 nucleotides
PfGW456L13_4336 - Flagellar biosynthesis protein FlhB, at 4,849,547 to 4,850,686
_4336
PfGW456L13_4337 - Flagellar biosynthesis protein FliR, at 4,850,690 to 4,851,472
_4337
PfGW456L13_4338 - Flagellar biosynthesis protein FliQ, at 4,851,476 to 4,851,745
_4338
PfGW456L13_4339 - Flagellar biosynthesis protein FliP, at 4,851,742 to 4,852,500
_4339
PfGW456L13_4340 - Flagellar biosynthesis protein FliQ, at 4,852,500 to 4,852,943
_4340
Position (kb) 4851
4852 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4850.749 kb on - strand at 4850.749 kb on - strand at 4850.831 kb on - strand, within PfGW456L13_4337 at 4850.906 kb on + strand, within PfGW456L13_4337 at 4851.478 kb on - strand at 4851.497 kb on - strand at 4851.504 kb on + strand, within PfGW456L13_4338 at 4851.505 kb on - strand, within PfGW456L13_4338 at 4851.505 kb on - strand, within PfGW456L13_4338 at 4851.505 kb on - strand, within PfGW456L13_4338 at 4851.519 kb on + strand, within PfGW456L13_4338 at 4851.519 kb on + strand, within PfGW456L13_4338 at 4851.519 kb on + strand, within PfGW456L13_4338 at 4851.520 kb on - strand, within PfGW456L13_4338 at 4851.520 kb on - strand, within PfGW456L13_4338 at 4851.520 kb on - strand, within PfGW456L13_4338 at 4851.520 kb on - strand, within PfGW456L13_4338 at 4851.864 kb on + strand, within PfGW456L13_4339 at 4851.864 kb on + strand, within PfGW456L13_4339 at 4851.865 kb on - strand, within PfGW456L13_4339 at 4851.865 kb on - strand, within PfGW456L13_4339 at 4851.880 kb on + strand, within PfGW456L13_4339 at 4851.880 kb on + strand, within PfGW456L13_4339 at 4851.881 kb on - strand, within PfGW456L13_4339 at 4851.881 kb on - strand, within PfGW456L13_4339 at 4852.329 kb on + strand, within PfGW456L13_4339 at 4852.330 kb on - strand at 4852.376 kb on + strand, within PfGW456L13_4339 at 4852.377 kb on - strand, within PfGW456L13_4339 at 4852.377 kb on - strand, within PfGW456L13_4339 at 4852.501 kb on + strand at 4852.502 kb on - strand at 4852.502 kb on - strand at 4852.502 kb on - strand at 4852.509 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 4,850,749 - +0.3 4,850,749 - -1.7 4,850,831 - PfGW456L13_4337 0.18 -0.0 4,850,906 + PfGW456L13_4337 0.28 -0.4 4,851,478 - -1.9 4,851,497 - -0.5 4,851,504 + PfGW456L13_4338 0.10 -0.4 4,851,505 - PfGW456L13_4338 0.11 +0.6 4,851,505 - PfGW456L13_4338 0.11 +0.3 4,851,505 - PfGW456L13_4338 0.11 +0.1 4,851,519 + PfGW456L13_4338 0.16 +0.5 4,851,519 + PfGW456L13_4338 0.16 +0.6 4,851,519 + PfGW456L13_4338 0.16 +1.7 4,851,520 - PfGW456L13_4338 0.16 +1.1 4,851,520 - PfGW456L13_4338 0.16 +1.3 4,851,520 - PfGW456L13_4338 0.16 +2.3 4,851,520 - PfGW456L13_4338 0.16 +1.6 4,851,864 + PfGW456L13_4339 0.16 -0.0 4,851,864 + PfGW456L13_4339 0.16 +1.0 4,851,865 - PfGW456L13_4339 0.16 +0.2 4,851,865 - PfGW456L13_4339 0.16 +0.9 4,851,880 + PfGW456L13_4339 0.18 +1.8 4,851,880 + PfGW456L13_4339 0.18 +1.2 4,851,881 - PfGW456L13_4339 0.18 +0.5 4,851,881 - PfGW456L13_4339 0.18 +1.5 4,852,329 + PfGW456L13_4339 0.77 -0.4 4,852,330 - +1.5 4,852,376 + PfGW456L13_4339 0.84 -0.0 4,852,377 - PfGW456L13_4339 0.84 -0.8 4,852,377 - PfGW456L13_4339 0.84 +0.9 4,852,501 + -1.3 4,852,502 - -1.2 4,852,502 - +0.9 4,852,502 - +2.3 4,852,509 - +0.5
Or see this region's nucleotide sequence