Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2608

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2606 and PfGW456L13_2607 are separated by 125 nucleotidesPfGW456L13_2607 and PfGW456L13_2608 are separated by 2 nucleotidesPfGW456L13_2608 and PfGW456L13_2609 are separated by 250 nucleotides PfGW456L13_2606 - Inner membrane component of tripartite multidrug resistance system, at 2,898,874 to 2,900,406 _2606 PfGW456L13_2607 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 2,900,532 to 2,901,278 _2607 PfGW456L13_2608 - Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8), at 2,901,281 to 2,901,784 _2608 PfGW456L13_2609 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 2,902,035 to 2,903,732 _2609 Position (kb) 2901 2902Strain fitness (log2 ratio) -2 -1 0 1 2at 2900.299 kb on + strandat 2900.299 kb on + strandat 2900.300 kb on - strandat 2900.300 kb on - strandat 2900.300 kb on - strandat 2900.300 kb on - strandat 2900.300 kb on - strandat 2900.300 kb on - strandat 2900.300 kb on - strandat 2901.535 kb on - strand, within PfGW456L13_2608at 2901.691 kb on - strand, within PfGW456L13_2608at 2901.691 kb on - strand, within PfGW456L13_2608at 2901.908 kb on + strandat 2901.908 kb on + strandat 2901.915 kb on + strandat 2901.918 kb on + strandat 2901.918 kb on + strandat 2901.918 kb on + strandat 2901.919 kb on - strandat 2901.919 kb on - strandat 2901.932 kb on + strandat 2901.932 kb on + strandat 2901.933 kb on - strandat 2901.953 kb on + strandat 2902.019 kb on + strandat 2902.019 kb on + strandat 2902.019 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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2,900,299 + -0.3
2,900,299 + -0.1
2,900,300 - +1.2
2,900,300 - +0.3
2,900,300 - -2.6
2,900,300 - -1.6
2,900,300 - +1.7
2,900,300 - -0.4
2,900,300 - -1.4
2,901,535 - PfGW456L13_2608 0.50 -1.1
2,901,691 - PfGW456L13_2608 0.81 -0.3
2,901,691 - PfGW456L13_2608 0.81 -0.8
2,901,908 + +0.1
2,901,908 + -0.9
2,901,915 + -1.7
2,901,918 + +1.3
2,901,918 + +0.5
2,901,918 + +0.9
2,901,919 - -0.8
2,901,919 - -0.5
2,901,932 + +0.4
2,901,932 + -0.2
2,901,933 - +2.5
2,901,953 + +0.7
2,902,019 + -1.6
2,902,019 + +1.7
2,902,019 + +1.5

Or see this region's nucleotide sequence