Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1113

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1112 and PfGW456L13_1113 are separated by 129 nucleotidesPfGW456L13_1113 and PfGW456L13_1114 are separated by 193 nucleotides PfGW456L13_1112 - GbcB Glycine betaine demethylase subunit B, at 1,233,917 to 1,235,017 _1112 PfGW456L13_1113 - Probable short-chain dehydrogenase, at 1,235,147 to 1,235,971 _1113 PfGW456L13_1114 - L-threonine aldolase (EC 4.1.2.5) (from data), at 1,236,165 to 1,237,205 _1114 Position (kb) 1235 1236Strain fitness (log2 ratio) -2 -1 0 1 2at 1234.298 kb on + strand, within PfGW456L13_1112at 1234.298 kb on + strand, within PfGW456L13_1112at 1234.299 kb on - strand, within PfGW456L13_1112at 1234.318 kb on + strand, within PfGW456L13_1112at 1234.352 kb on + strand, within PfGW456L13_1112at 1234.353 kb on - strand, within PfGW456L13_1112at 1234.384 kb on + strand, within PfGW456L13_1112at 1234.385 kb on - strand, within PfGW456L13_1112at 1234.418 kb on + strand, within PfGW456L13_1112at 1234.418 kb on + strand, within PfGW456L13_1112at 1234.419 kb on - strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.603 kb on + strand, within PfGW456L13_1112at 1234.603 kb on + strand, within PfGW456L13_1112at 1234.603 kb on + strand, within PfGW456L13_1112at 1234.603 kb on + strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.873 kb on + strand, within PfGW456L13_1112at 1234.874 kb on - strand, within PfGW456L13_1112at 1234.991 kb on - strandat 1235.015 kb on + strandat 1235.029 kb on + strandat 1235.030 kb on - strandat 1235.039 kb on - strandat 1235.072 kb on + strandat 1235.472 kb on + strand, within PfGW456L13_1113at 1235.486 kb on - strand, within PfGW456L13_1113at 1235.486 kb on - strand, within PfGW456L13_1113at 1235.486 kb on - strand, within PfGW456L13_1113at 1235.487 kb on + strand, within PfGW456L13_1113at 1235.487 kb on + strand, within PfGW456L13_1113at 1235.488 kb on - strand, within PfGW456L13_1113at 1235.488 kb on - strand, within PfGW456L13_1113at 1235.488 kb on - strand, within PfGW456L13_1113at 1235.496 kb on + strand, within PfGW456L13_1113at 1235.496 kb on + strand, within PfGW456L13_1113at 1235.497 kb on - strand, within PfGW456L13_1113at 1235.497 kb on - strand, within PfGW456L13_1113at 1235.497 kb on - strand, within PfGW456L13_1113at 1235.497 kb on - strand, within PfGW456L13_1113at 1235.600 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.976 kb on - strandat 1235.976 kb on - strandat 1235.987 kb on + strandat 1235.988 kb on - strandat 1235.988 kb on - strandat 1235.988 kb on - strandat 1235.988 kb on - strandat 1235.993 kb on + strandat 1235.993 kb on + strandat 1235.994 kb on - strandat 1236.021 kb on + strandat 1236.021 kb on + strandat 1236.021 kb on + strandat 1236.022 kb on - strandat 1236.022 kb on - strandat 1236.047 kb on - strandat 1236.047 kb on - strandat 1236.047 kb on - strandat 1236.047 kb on - strandat 1236.158 kb on + strandat 1236.158 kb on + strandat 1236.159 kb on - strandat 1236.159 kb on - strandat 1236.166 kb on + strandat 1236.272 kb on - strand, within PfGW456L13_1114at 1236.427 kb on + strand, within PfGW456L13_1114at 1236.427 kb on + strand, within PfGW456L13_1114at 1236.428 kb on - strand, within PfGW456L13_1114at 1236.428 kb on - strand, within PfGW456L13_1114at 1236.752 kb on - strand, within PfGW456L13_1114at 1236.752 kb on - strand, within PfGW456L13_1114at 1236.970 kb on + strand, within PfGW456L13_1114at 1236.970 kb on + strand, within PfGW456L13_1114at 1236.970 kb on + strand, within PfGW456L13_1114at 1236.971 kb on - strand, within PfGW456L13_1114at 1236.971 kb on - strand, within PfGW456L13_1114

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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1,234,298 + PfGW456L13_1112 0.35 +0.4
1,234,298 + PfGW456L13_1112 0.35 +0.2
1,234,299 - PfGW456L13_1112 0.35 -1.6
1,234,318 + PfGW456L13_1112 0.36 +0.7
1,234,352 + PfGW456L13_1112 0.40 +0.4
1,234,353 - PfGW456L13_1112 0.40 +0.4
1,234,384 + PfGW456L13_1112 0.42 -0.3
1,234,385 - PfGW456L13_1112 0.43 +0.1
1,234,418 + PfGW456L13_1112 0.46 +0.4
1,234,418 + PfGW456L13_1112 0.46 -0.4
1,234,419 - PfGW456L13_1112 0.46 -0.9
1,234,601 + PfGW456L13_1112 0.62 -2.6
1,234,601 + PfGW456L13_1112 0.62 +0.8
1,234,601 + PfGW456L13_1112 0.62 +0.7
1,234,601 + PfGW456L13_1112 0.62 -2.1
1,234,601 + PfGW456L13_1112 0.62 -1.1
1,234,601 + PfGW456L13_1112 0.62 -0.7
1,234,601 + PfGW456L13_1112 0.62 -0.1
1,234,601 + PfGW456L13_1112 0.62 -0.1
1,234,601 + PfGW456L13_1112 0.62 -1.4
1,234,601 + PfGW456L13_1112 0.62 +0.5
1,234,601 + PfGW456L13_1112 0.62 -0.4
1,234,601 + PfGW456L13_1112 0.62 -1.3
1,234,602 - PfGW456L13_1112 0.62 +1.2
1,234,602 - PfGW456L13_1112 0.62 -0.2
1,234,602 - PfGW456L13_1112 0.62 +0.9
1,234,602 - PfGW456L13_1112 0.62 +0.3
1,234,602 - PfGW456L13_1112 0.62 -0.0
1,234,602 - PfGW456L13_1112 0.62 +0.4
1,234,602 - PfGW456L13_1112 0.62 -0.9
1,234,602 - PfGW456L13_1112 0.62 +0.7
1,234,602 - PfGW456L13_1112 0.62 -0.2
1,234,602 - PfGW456L13_1112 0.62 -0.0
1,234,603 + PfGW456L13_1112 0.62 +0.6
1,234,603 + PfGW456L13_1112 0.62 +1.0
1,234,603 + PfGW456L13_1112 0.62 -1.1
1,234,603 + PfGW456L13_1112 0.62 +1.3
1,234,604 - PfGW456L13_1112 0.62 +0.5
1,234,604 - PfGW456L13_1112 0.62 -1.1
1,234,604 - PfGW456L13_1112 0.62 +1.6
1,234,604 - PfGW456L13_1112 0.62 -0.2
1,234,604 - PfGW456L13_1112 0.62 +0.4
1,234,604 - PfGW456L13_1112 0.62 +0.2
1,234,604 - PfGW456L13_1112 0.62 +0.9
1,234,604 - PfGW456L13_1112 0.62 +0.7
1,234,604 - PfGW456L13_1112 0.62 +1.3
1,234,604 - PfGW456L13_1112 0.62 -1.9
1,234,604 - PfGW456L13_1112 0.62 +0.9
1,234,873 + PfGW456L13_1112 0.87 -0.9
1,234,874 - PfGW456L13_1112 0.87 +1.7
1,234,991 - +1.1
1,235,015 + -0.4
1,235,029 + +2.1
1,235,030 - -0.1
1,235,039 - +1.1
1,235,072 + +0.2
1,235,472 + PfGW456L13_1113 0.39 -1.7
1,235,486 - PfGW456L13_1113 0.41 +0.6
1,235,486 - PfGW456L13_1113 0.41 +0.6
1,235,486 - PfGW456L13_1113 0.41 +0.3
1,235,487 + PfGW456L13_1113 0.41 +0.3
1,235,487 + PfGW456L13_1113 0.41 -0.2
1,235,488 - PfGW456L13_1113 0.41 -1.2
1,235,488 - PfGW456L13_1113 0.41 +1.5
1,235,488 - PfGW456L13_1113 0.41 +0.9
1,235,496 + PfGW456L13_1113 0.42 +1.6
1,235,496 + PfGW456L13_1113 0.42 +0.9
1,235,497 - PfGW456L13_1113 0.42 +0.3
1,235,497 - PfGW456L13_1113 0.42 +0.6
1,235,497 - PfGW456L13_1113 0.42 -1.1
1,235,497 - PfGW456L13_1113 0.42 +0.5
1,235,600 + PfGW456L13_1113 0.55 -0.3
1,235,702 + PfGW456L13_1113 0.67 -1.5
1,235,702 + PfGW456L13_1113 0.67 +0.8
1,235,702 + PfGW456L13_1113 0.67 -0.1
1,235,702 + PfGW456L13_1113 0.67 +0.6
1,235,702 + PfGW456L13_1113 0.67 +0.4
1,235,702 + PfGW456L13_1113 0.67 +0.9
1,235,702 + PfGW456L13_1113 0.67 -2.0
1,235,702 + PfGW456L13_1113 0.67 -1.4
1,235,702 + PfGW456L13_1113 0.67 +1.0
1,235,702 + PfGW456L13_1113 0.67 +0.3
1,235,703 - PfGW456L13_1113 0.67 -0.2
1,235,703 - PfGW456L13_1113 0.67 -0.9
1,235,703 - PfGW456L13_1113 0.67 -1.7
1,235,703 - PfGW456L13_1113 0.67 -1.9
1,235,703 - PfGW456L13_1113 0.67 +0.8
1,235,703 - PfGW456L13_1113 0.67 +0.3
1,235,703 - PfGW456L13_1113 0.67 +0.1
1,235,703 - PfGW456L13_1113 0.67 +1.8
1,235,703 - PfGW456L13_1113 0.67 +0.5
1,235,703 - PfGW456L13_1113 0.67 +0.2
1,235,703 - PfGW456L13_1113 0.67 -0.9
1,235,975 + -1.5
1,235,975 + +0.6
1,235,975 + -1.3
1,235,975 + -1.3
1,235,975 + +0.3
1,235,975 + +0.1
1,235,975 + -1.0
1,235,976 - -0.7
1,235,976 - +1.5
1,235,987 + +0.6
1,235,988 - -0.7
1,235,988 - -1.3
1,235,988 - +1.3
1,235,988 - -0.9
1,235,993 + -0.4
1,235,993 + +0.7
1,235,994 - +0.9
1,236,021 + -0.9
1,236,021 + +0.3
1,236,021 + +0.3
1,236,022 - -0.7
1,236,022 - +0.6
1,236,047 - +0.9
1,236,047 - +0.4
1,236,047 - +1.0
1,236,047 - +0.5
1,236,158 + +0.7
1,236,158 + +1.1
1,236,159 - +0.4
1,236,159 - -1.1
1,236,166 + +0.6
1,236,272 - PfGW456L13_1114 0.10 +0.9
1,236,427 + PfGW456L13_1114 0.25 +0.7
1,236,427 + PfGW456L13_1114 0.25 +1.2
1,236,428 - PfGW456L13_1114 0.25 +1.5
1,236,428 - PfGW456L13_1114 0.25 +1.0
1,236,752 - PfGW456L13_1114 0.56 -0.6
1,236,752 - PfGW456L13_1114 0.56 -2.2
1,236,970 + PfGW456L13_1114 0.77 -1.3
1,236,970 + PfGW456L13_1114 0.77 +1.2
1,236,970 + PfGW456L13_1114 0.77 -1.2
1,236,971 - PfGW456L13_1114 0.77 -0.2
1,236,971 - PfGW456L13_1114 0.77 -2.2

Or see this region's nucleotide sequence