Strain Fitness in Pseudomonas fluorescens SBW25

Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS20370

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	D-Glucose (C); with MOPS
				remove
4,596,611	+	PFLU_RS20365	0.10	-0.2
4,596,611	+	PFLU_RS20365	0.10	-0.6
4,596,611	+	PFLU_RS20365	0.10	-1.0
4,596,612	-	PFLU_RS20365	0.11	+0.1
4,596,612	-	PFLU_RS20365	0.11	-1.1
4,596,618	+	PFLU_RS20365	0.11	-0.1
4,596,618	+	PFLU_RS20365	0.11	+0.6
4,596,619	-	PFLU_RS20365	0.11	+2.1
4,596,619	-	PFLU_RS20365	0.11	+1.1
4,596,619	-	PFLU_RS20365	0.11	-0.2
4,596,619	-	PFLU_RS20365	0.11	+0.6
4,596,683	-	PFLU_RS20365	0.17	+0.3
4,596,688	+	PFLU_RS20365	0.18	-0.2
4,596,688	+	PFLU_RS20365	0.18	-0.0
4,596,689	-	PFLU_RS20365	0.18	-1.4
4,596,783	+	PFLU_RS20365	0.27	+0.4
4,596,783	+	PFLU_RS20365	0.27	+0.5
4,596,783	+	PFLU_RS20365	0.27	+0.8
4,596,783	+	PFLU_RS20365	0.27	+0.7
4,596,783	+	PFLU_RS20365	0.27	+1.2
4,596,783	+	PFLU_RS20365	0.27	-0.7
4,596,783	+	PFLU_RS20365	0.27	+0.9
4,596,783	+	PFLU_RS20365	0.27	+0.2
4,596,784	-	PFLU_RS20365	0.27	-1.3
4,596,784	-	PFLU_RS20365	0.27	+1.0
4,596,784	-	PFLU_RS20365	0.27	-0.4
4,596,784	-	PFLU_RS20365	0.27	+1.4
4,596,784	-	PFLU_RS20365	0.27	-2.1
4,596,784	-	PFLU_RS20365	0.27	-2.0
4,596,784	-	PFLU_RS20365	0.27	+0.4
4,596,784	-	PFLU_RS20365	0.27	-0.3
4,596,848	+	PFLU_RS20365	0.34	+0.8
4,596,848	+	PFLU_RS20365	0.34	+0.6
4,596,849	-	PFLU_RS20365	0.34	-0.7
4,596,849	-	PFLU_RS20365	0.34	+0.0
4,596,849	-	PFLU_RS20365	0.34	+0.4
4,596,850	+	PFLU_RS20365	0.34	-0.1
4,596,850	+	PFLU_RS20365	0.34	+0.9
4,597,030	+	PFLU_RS20365	0.51	+0.5
4,597,072	-	PFLU_RS20365	0.56	-0.8
4,597,072	-	PFLU_RS20365	0.56	+0.3
4,597,072	-	PFLU_RS20365	0.56	+1.2
4,597,072	-	PFLU_RS20365	0.56	+1.2
4,597,072	-	PFLU_RS20365	0.56	+1.1
4,597,098	+	PFLU_RS20365	0.58	+1.5
4,597,098	+	PFLU_RS20365	0.58	-0.3
4,597,098	+	PFLU_RS20365	0.58	-0.6
4,597,098	+	PFLU_RS20365	0.58	-0.7
4,597,098	+	PFLU_RS20365	0.58	-0.1
4,597,098	+	PFLU_RS20365	0.58	+0.6
4,597,098	+	PFLU_RS20365	0.58	+2.2
4,597,098	+	PFLU_RS20365	0.58	-1.2
4,597,098	+	PFLU_RS20365	0.58	+1.7
4,597,098	+	PFLU_RS20365	0.58	-2.0
4,597,098	+	PFLU_RS20365	0.58	+0.7
4,597,099	-	PFLU_RS20365	0.58	-0.0
4,597,099	-	PFLU_RS20365	0.58	-0.4
4,597,099	-	PFLU_RS20365	0.58	+1.2
4,597,099	-	PFLU_RS20365	0.58	+0.4
4,597,207	+	PFLU_RS20365	0.69	-1.8
4,597,207	+	PFLU_RS20365	0.69	+0.4
4,597,207	+	PFLU_RS20365	0.69	-0.9
4,597,207	+	PFLU_RS20365	0.69	+0.1
4,597,208	-	PFLU_RS20365	0.69	-0.5
4,597,208	-	PFLU_RS20365	0.69	+0.2
4,597,208	-	PFLU_RS20365	0.69	+1.2
4,597,208	-	PFLU_RS20365	0.69	-0.2
4,597,208	-	PFLU_RS20365	0.69	-0.0
4,597,208	-	PFLU_RS20365	0.69	-0.0
4,597,208	-	PFLU_RS20365	0.69	+0.4
4,597,309	+	PFLU_RS20365	0.79	-1.2
4,597,310	-	PFLU_RS20365	0.79	+0.2
4,597,393	+	PFLU_RS20365	0.87	+0.4
4,597,393	+	PFLU_RS20365	0.87	+1.1
4,597,394	-	PFLU_RS20365	0.87	+0.7
4,597,394	-	PFLU_RS20365	0.87	-2.9
4,597,394	-	PFLU_RS20365	0.87	-0.7
4,597,394	-	PFLU_RS20365	0.87	-0.9
4,597,394	-	PFLU_RS20365	0.87	+0.7
4,597,432	-			+0.9
4,597,484	-			+0.3
4,597,490	+			-0.4
4,597,491	-			+0.9
4,597,491	-			+1.6
4,597,561	+			+1.4
4,597,566	-			+1.6
4,597,617	-			+0.3
4,597,665	-	PFLU_RS20370	0.14	-0.4
4,597,665	-	PFLU_RS20370	0.14	+1.2
4,597,685	+	PFLU_RS20370	0.16	-1.5
4,597,721	+	PFLU_RS20370	0.20	+0.2
4,597,862	-	PFLU_RS20370	0.34	-0.7
4,597,862	-	PFLU_RS20370	0.34	+1.2
4,597,925	-	PFLU_RS20370	0.40	+0.3
4,597,941	-	PFLU_RS20370	0.42	-0.9
4,597,950	+	PFLU_RS20370	0.43	-0.5
4,597,950	+	PFLU_RS20370	0.43	-0.3
4,597,950	+	PFLU_RS20370	0.43	-0.1
4,597,950	+	PFLU_RS20370	0.43	+1.1
4,597,950	+	PFLU_RS20370	0.43	+0.5
4,597,950	+	PFLU_RS20370	0.43	+0.2
4,597,951	-	PFLU_RS20370	0.43	-0.7
4,597,951	-	PFLU_RS20370	0.43	+0.1
4,597,951	-	PFLU_RS20370	0.43	-0.5
4,598,003	+	PFLU_RS20370	0.48	+0.6
4,598,003	+	PFLU_RS20370	0.48	-1.4
4,598,004	-	PFLU_RS20370	0.48	+0.1
4,598,004	-	PFLU_RS20370	0.48	+0.8
4,598,048	+	PFLU_RS20370	0.53	+2.6
4,598,049	-	PFLU_RS20370	0.53	+0.1
4,598,049	-	PFLU_RS20370	0.53	-0.4
4,598,049	-	PFLU_RS20370	0.53	-1.7
4,598,049	-	PFLU_RS20370	0.53	-0.6
4,598,049	-	PFLU_RS20370	0.53	+0.4
4,598,049	-	PFLU_RS20370	0.53	+0.0
4,598,050	+	PFLU_RS20370	0.53	-2.5
4,598,050	+	PFLU_RS20370	0.53	+0.6
4,598,050	+	PFLU_RS20370	0.53	-1.7
4,598,050	+	PFLU_RS20370	0.53	+0.1
4,598,050	+	PFLU_RS20370	0.53	+0.1
4,598,050	+	PFLU_RS20370	0.53	-0.6
4,598,050	+	PFLU_RS20370	0.53	-0.0
4,598,050	+	PFLU_RS20370	0.53	-1.5
4,598,050	+	PFLU_RS20370	0.53	-0.6
4,598,051	-	PFLU_RS20370	0.53	-0.2
4,598,051	-	PFLU_RS20370	0.53	+1.0
4,598,051	-	PFLU_RS20370	0.53	+0.3
4,598,051	-	PFLU_RS20370	0.53	-1.4
4,598,051	-	PFLU_RS20370	0.53	+0.4
4,598,051	-	PFLU_RS20370	0.53	-0.7
4,598,051	-	PFLU_RS20370	0.53	-0.3
4,598,051	-	PFLU_RS20370	0.53	-0.5
4,598,051	-	PFLU_RS20370	0.53	+1.1
4,598,051	-	PFLU_RS20370	0.53	+0.8
4,598,116	-	PFLU_RS20370	0.60	+0.5
4,598,120	+	PFLU_RS20370	0.60	+1.2
4,598,291	+	PFLU_RS20370	0.78	+1.4
4,598,377	+	PFLU_RS20370	0.87	-0.9
4,598,377	+	PFLU_RS20370	0.87	-0.3
4,598,377	+	PFLU_RS20370	0.87	+0.4
4,598,378	-	PFLU_RS20370	0.87	-1.5
4,598,378	-	PFLU_RS20370	0.87	-0.8
4,598,378	-	PFLU_RS20370	0.87	-0.4
4,598,449	+			+1.1
4,598,449	+			-0.9
4,598,449	+			-0.8
4,598,449	+			-0.9
4,598,449	+			-1.9
4,598,449	+			+0.5
4,598,449	+			+0.4
4,598,450	-			+0.1
4,598,450	-			+0.0
4,598,450	-			-1.9
4,598,450	-			+1.5
4,598,450	-			+0.6
4,598,450	-			-0.5
4,598,450	-			+1.5
4,598,450	-			+0.0
4,598,450	-			+0.1
4,598,450	-			+0.2
4,598,736	+	PFLU_RS20375	0.15	-0.6
4,598,736	+	PFLU_RS20375	0.15	+0.3
4,598,736	+	PFLU_RS20375	0.15	+1.4
4,598,736	+	PFLU_RS20375	0.15	-0.5
4,598,736	+	PFLU_RS20375	0.15	+0.1
4,598,736	+	PFLU_RS20375	0.15	-2.7
4,598,736	+	PFLU_RS20375	0.15	+1.8
4,598,736	+	PFLU_RS20375	0.15	-0.4
4,598,737	-	PFLU_RS20375	0.15	+0.1
4,598,737	-	PFLU_RS20375	0.15	-0.4
4,598,737	-	PFLU_RS20375	0.15	+0.1
4,598,737	-	PFLU_RS20375	0.15	+0.8
4,598,737	-	PFLU_RS20375	0.15	-0.5
4,598,737	-	PFLU_RS20375	0.15	+0.4
4,598,737	-	PFLU_RS20375	0.15	-0.1
4,598,737	-	PFLU_RS20375	0.15	+1.4
4,598,737	-	PFLU_RS20375	0.15	+0.7
4,598,737	-	PFLU_RS20375	0.15	+0.4
4,598,737	-	PFLU_RS20375	0.15	-0.3
4,598,740	+	PFLU_RS20375	0.15	-1.4
4,599,196	+	PFLU_RS20375	0.45	+1.1
4,599,201	+	PFLU_RS20375	0.45	-0.8
4,599,201	+	PFLU_RS20375	0.45	-1.7
4,599,201	+	PFLU_RS20375	0.45	+0.3
4,599,201	+	PFLU_RS20375	0.45	-0.2
4,599,201	+	PFLU_RS20375	0.45	+0.3
4,599,201	+	PFLU_RS20375	0.45	+1.5
4,599,201	+	PFLU_RS20375	0.45	+0.1
4,599,201	+	PFLU_RS20375	0.45	-0.1
4,599,201	+	PFLU_RS20375	0.45	+0.7
4,599,202	-	PFLU_RS20375	0.45	+0.1
4,599,202	-	PFLU_RS20375	0.45	-1.6
4,599,202	-	PFLU_RS20375	0.45	+1.0
4,599,202	-	PFLU_RS20375	0.45	-0.1
4,599,202	-	PFLU_RS20375	0.45	+0.9
4,599,202	-	PFLU_RS20375	0.45	+1.6
4,599,363	+	PFLU_RS20375	0.55	-0.5
4,599,363	+	PFLU_RS20375	0.55	-0.5
4,599,363	+	PFLU_RS20375	0.55	+2.4
4,599,363	+	PFLU_RS20375	0.55	+1.0
4,599,363	+	PFLU_RS20375	0.55	+1.3
4,599,363	+	PFLU_RS20375	0.55	-1.1
4,599,363	+	PFLU_RS20375	0.55	-2.0
4,599,364	-	PFLU_RS20375	0.55	-2.4
4,599,364	-	PFLU_RS20375	0.55	+0.0
4,599,364	-	PFLU_RS20375	0.55	+0.3
4,599,364	-	PFLU_RS20375	0.55	+0.3
4,599,364	-	PFLU_RS20375	0.55	+0.7
4,599,364	-	PFLU_RS20375	0.55	-1.3
4,599,407	+	PFLU_RS20375	0.58	+0.9
4,599,459	+	PFLU_RS20375	0.61	+0.1
4,599,459	+	PFLU_RS20375	0.61	+0.2
4,599,459	+	PFLU_RS20375	0.61	-0.3
4,599,459	+	PFLU_RS20375	0.61	+0.6
4,599,459	+	PFLU_RS20375	0.61	+2.6
4,599,460	-	PFLU_RS20375	0.62	+0.7
4,599,463	+	PFLU_RS20375	0.62	-0.2
4,599,463	+	PFLU_RS20375	0.62	+0.3
4,599,464	-	PFLU_RS20375	0.62	+1.4
4,599,464	-	PFLU_RS20375	0.62	+0.4
4,599,464	-	PFLU_RS20375	0.62	+0.9
4,599,464	-	PFLU_RS20375	0.62	+0.3
4,599,464	-	PFLU_RS20375	0.62	+0.0

Or see this region's nucleotide sequence