Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS17840

Experiment: D-Glucose (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C); with MOPS
4,049,892	-				+0.7
4,049,892	-				-0.9
4,049,909	+				+0.4
4,049,910	-				-0.3
4,049,910	-				-0.5
4,049,910	-				-1.7
4,049,910	-				+1.8
4,049,928	+				+0.5
4,049,929	-				+0.2
4,049,929	-				-0.8
4,049,929	-				-1.8
4,049,929	-				-1.3
4,049,947	+				+0.2
4,049,947	+				+0.3
4,049,947	+				+1.7
4,049,963	+				-1.3
4,049,964	-				+0.9
4,049,964	-				-0.4
4,050,058	+		PFLU_RS17835	0.14	+1.3
4,050,059	-		PFLU_RS17835	0.14	+0.2
4,050,059	-		PFLU_RS17835	0.14	-0.0
4,050,146	+		PFLU_RS17835	0.28	-1.5
4,050,146	+		PFLU_RS17835	0.28	-1.1
4,050,146	+		PFLU_RS17835	0.28	+0.3
4,050,146	+		PFLU_RS17835	0.28	-0.2
4,050,150	+		PFLU_RS17835	0.28	+0.1
4,050,150	+		PFLU_RS17835	0.28	-0.8
4,050,150	+		PFLU_RS17835	0.28	-1.5
4,050,150	-		PFLU_RS17835	0.28	+0.1
4,050,151	-		PFLU_RS17835	0.28	+0.1
4,050,151	-		PFLU_RS17835	0.28	+0.4
4,050,151	-		PFLU_RS17835	0.28	-1.6
4,050,151	-		PFLU_RS17835	0.28	-1.1
4,050,151	-		PFLU_RS17835	0.28	+0.6
4,050,151	-		PFLU_RS17835	0.28	+0.7
4,050,159	-		PFLU_RS17835	0.30	-0.9
4,050,175	+		PFLU_RS17835	0.32	+0.2
4,050,176	-		PFLU_RS17835	0.32	+1.1
4,050,176	-		PFLU_RS17835	0.32	-0.0
4,050,191	+		PFLU_RS17835	0.34	+0.2
4,050,192	-		PFLU_RS17835	0.35	+0.3
4,050,251	+		PFLU_RS17835	0.43	-1.7
4,050,258	-		PFLU_RS17835	0.45	+0.9
4,050,297	+		PFLU_RS17835	0.50	-2.9
4,050,392	+		PFLU_RS17835	0.65	+0.1
4,050,451	+		PFLU_RS17835	0.74	-0.9
4,050,451	+		PFLU_RS17835	0.74	-1.3
4,050,451	+		PFLU_RS17835	0.74	+0.2
4,050,452	-		PFLU_RS17835	0.74	-0.9
4,050,677	+				-0.0
4,050,678	-				-1.2
4,050,679	+				+0.4
4,050,679	+				+1.3
4,050,680	-				+1.7
4,050,680	-				+1.3
4,050,693	+				-0.5
4,050,729	+				-1.5
4,050,729	+				+0.0
4,050,730	-				+0.2
4,050,731	+				-0.7
4,050,732	-				+0.5
4,050,763	+				+0.3
4,050,763	+				+0.6
4,050,764	-				-0.1
4,050,802	+				+0.3
4,050,869	+				-0.8
4,050,870	-				-1.5
4,050,870	-				+0.7
4,050,870	-				+0.9
4,050,870	-				-1.2
4,050,879	-				+0.7
4,050,881	+				+1.3
4,050,882	-				+1.0
4,050,885	-				-0.4
4,050,952	+				+0.3
4,050,952	+				+0.0
4,050,953	-				+0.6
4,050,958	+				+1.1
4,050,959	-				+0.8
4,050,959	-				-2.1
4,051,005	+				+1.1
4,051,006	-				+1.5
4,051,007	+				+1.3
4,051,007	+				+1.1
4,051,007	+				+0.0
4,051,007	+				+0.4
4,051,008	-				+0.4
4,051,008	-				-0.0
4,051,008	-				-3.2
4,051,008	-				+0.2
4,051,037	-		PFLU_RS17840	0.12	-0.7
4,051,056	+		PFLU_RS17840	0.13	+1.4
4,051,058	+		PFLU_RS17840	0.14	+0.5
4,051,058	+		PFLU_RS17840	0.14	+0.2
4,051,059	-		PFLU_RS17840	0.14	-0.3
4,051,074	+		PFLU_RS17840	0.15	+1.2
4,051,074	+		PFLU_RS17840	0.15	+1.7
4,051,129	+		PFLU_RS17840	0.19	-2.7
4,051,130	-		PFLU_RS17840	0.19	-1.5
4,051,134	-		PFLU_RS17840	0.19	+0.2
4,051,134	-		PFLU_RS17840	0.19	+0.4
4,051,245	+		PFLU_RS17840	0.27	+0.1
4,051,245	+		PFLU_RS17840	0.27	-0.7
4,051,245	+		PFLU_RS17840	0.27	+0.1
4,051,245	+		PFLU_RS17840	0.27	-1.5
4,051,245	+		PFLU_RS17840	0.27	+0.3
4,051,246	-		PFLU_RS17840	0.27	+1.2
4,051,246	-		PFLU_RS17840	0.27	-2.4
4,051,246	-		PFLU_RS17840	0.27	+0.5
4,051,246	-		PFLU_RS17840	0.27	-1.0
4,051,246	-		PFLU_RS17840	0.27	-1.7
4,051,246	-		PFLU_RS17840	0.27	+1.3
4,051,248	-		PFLU_RS17840	0.27	-0.2
4,051,272	+		PFLU_RS17840	0.29	+0.1
4,051,275	+		PFLU_RS17840	0.29	+0.9
4,051,276	-		PFLU_RS17840	0.29	+0.7
4,051,291	-		PFLU_RS17840	0.30	+0.4
4,051,291	-		PFLU_RS17840	0.30	-0.8
4,051,346	+		PFLU_RS17840	0.34	+0.7
4,051,346	+		PFLU_RS17840	0.34	+0.2
4,051,347	-		PFLU_RS17840	0.34	+0.6
4,051,432	+		PFLU_RS17840	0.40	-1.8
4,051,432	+		PFLU_RS17840	0.40	+1.0
4,051,432	+		PFLU_RS17840	0.40	+1.3
4,051,432	+		PFLU_RS17840	0.40	+1.0
4,051,491	+		PFLU_RS17840	0.45	+0.5
4,051,491	+		PFLU_RS17840	0.45	+0.2
4,051,491	+		PFLU_RS17840	0.45	+0.4
4,051,491	+		PFLU_RS17840	0.45	+0.2
4,051,491	+		PFLU_RS17840	0.45	+0.7
4,051,492	-		PFLU_RS17840	0.45	+0.3
4,051,536	+		PFLU_RS17840	0.48	+2.1
4,051,536	+		PFLU_RS17840	0.48	+0.4
4,051,537	-		PFLU_RS17840	0.48	+1.7
4,051,943	+		PFLU_RS17840	0.77	-0.5
4,051,992	-		PFLU_RS17840	0.81	+0.5
4,052,041	-		PFLU_RS17840	0.84	+0.6
4,052,061	+		PFLU_RS17840	0.86	-0.3
4,052,061	+		PFLU_RS17840	0.86	-1.7
4,052,061	+		PFLU_RS17840	0.86	+2.8
4,052,062	-		PFLU_RS17840	0.86	-0.1
4,052,062	-		PFLU_RS17840	0.86	-0.5
4,052,062	-		PFLU_RS17840	0.86	-1.4
4,052,062	-		PFLU_RS17840	0.86	-0.7
4,052,062	-		PFLU_RS17840	0.86	+0.1
4,052,062	-		PFLU_RS17840	0.86	+0.3
4,052,062	-		PFLU_RS17840	0.86	-0.1
4,052,062	-		PFLU_RS17840	0.86	+0.6
4,052,062	-		PFLU_RS17840	0.86	-0.0
4,052,178	+				+1.3
4,052,178	+				-0.4
4,052,179	-				-1.1
4,052,179	-				-0.2
4,052,179	-				-0.0
4,052,186	+				-2.4
4,052,186	+				+1.2
4,052,187	-				+0.5
4,052,235	-				-1.2
4,052,235	-				+0.0
4,052,242	+				-0.2
4,052,242	+				-0.4
4,052,253	-				+0.1
4,052,256	+				+0.8
4,052,256	+				+1.3
4,052,256	+				+0.3
4,052,256	+				-0.2
4,052,256	+				-0.1
4,052,308	-				+2.1
4,052,374	-				-0.4
4,052,374	-				+0.3
4,052,389	-				-0.7
4,052,443	+				-0.5
4,052,470	+				-0.5
4,052,470	+				+0.4
4,052,623	+				+1.5
4,052,623	+				-0.4
4,052,700	+		PFLU_RS17845	0.12	-1.0
4,052,700	+		PFLU_RS17845	0.12	-0.0
4,052,700	+		PFLU_RS17845	0.12	-0.4
4,052,700	+		PFLU_RS17845	0.12	+0.3
4,052,700	+		PFLU_RS17845	0.12	+0.2
4,052,701	-		PFLU_RS17845	0.12	+1.2
4,052,701	-		PFLU_RS17845	0.12	-0.9
4,052,701	-		PFLU_RS17845	0.12	-0.9
4,052,701	-		PFLU_RS17845	0.12	+1.5
4,052,701	-		PFLU_RS17845	0.12	+1.8
4,052,701	-		PFLU_RS17845	0.12	-0.0
4,052,805	-		PFLU_RS17845	0.17	-0.9
4,052,881	+		PFLU_RS17845	0.21	-1.0
4,052,881	+		PFLU_RS17845	0.21	+1.1
4,052,881	+		PFLU_RS17845	0.21	+0.0
4,052,881	+		PFLU_RS17845	0.21	-1.8
4,052,881	+		PFLU_RS17845	0.21	+0.2
4,052,882	-		PFLU_RS17845	0.21	+0.8
4,052,882	-		PFLU_RS17845	0.21	-1.3
4,052,953	+		PFLU_RS17845	0.25	-2.8
4,052,953	+		PFLU_RS17845	0.25	-0.5
4,052,953	+		PFLU_RS17845	0.25	-2.5
4,052,953	+		PFLU_RS17845	0.25	+2.4
4,052,953	+		PFLU_RS17845	0.25	+0.6
4,052,953	+		PFLU_RS17845	0.25	+1.1
4,052,954	-		PFLU_RS17845	0.25	+1.2
4,052,954	-		PFLU_RS17845	0.25	-0.1
4,052,954	-		PFLU_RS17845	0.25	+2.1
4,052,977	+		PFLU_RS17845	0.26	+0.2
4,052,989	+		PFLU_RS17845	0.26	+0.8
4,052,990	-		PFLU_RS17845	0.26	+0.3
4,053,061	+		PFLU_RS17845	0.30	+1.1
4,053,061	+		PFLU_RS17845	0.30	-0.1
4,053,061	+		PFLU_RS17845	0.30	+1.6
4,053,061	+		PFLU_RS17845	0.30	-1.2
4,053,062	-		PFLU_RS17845	0.30	+0.9
4,053,062	-		PFLU_RS17845	0.30	+0.5
4,053,062	-		PFLU_RS17845	0.30	-1.9
4,053,109	+		PFLU_RS17845	0.32	-2.1
4,053,110	-		PFLU_RS17845	0.32	+1.1
4,053,110	-		PFLU_RS17845	0.32	-0.2
4,053,110	-		PFLU_RS17845	0.32	+0.7
4,053,110	-		PFLU_RS17845	0.32	+0.2
4,053,113	+		PFLU_RS17845	0.32	-0.6
4,053,113	+		PFLU_RS17845	0.32	+0.3
4,053,113	+		PFLU_RS17845	0.32	+0.9
4,053,113	+		PFLU_RS17845	0.32	-0.5
4,053,113	+		PFLU_RS17845	0.32	-1.6
4,053,125	-		PFLU_RS17845	0.33	+0.3
4,053,125	-		PFLU_RS17845	0.33	-0.7
4,053,125	-		PFLU_RS17845	0.33	-0.2
4,053,125	-		PFLU_RS17845	0.33	-0.1
4,053,125	-		PFLU_RS17845	0.33	-0.7
4,053,132	+		PFLU_RS17845	0.33	-0.9
4,053,132	+		PFLU_RS17845	0.33	-1.5
4,053,250	+		PFLU_RS17845	0.39	-1.0