Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS15375

Experiment: D-Glucose (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C); with MOPS
3,445,668	+		PFLU_RS15370	0.38	-0.6
3,445,668	+		PFLU_RS15370	0.38	+0.3
3,445,668	+		PFLU_RS15370	0.38	+1.3
3,445,669	-		PFLU_RS15370	0.38	+1.8
3,445,669	-		PFLU_RS15370	0.38	+0.6
3,445,732	+		PFLU_RS15370	0.43	-1.4
3,445,816	-		PFLU_RS15370	0.49	-0.1
3,445,995	+		PFLU_RS15370	0.61	-2.8
3,445,996	-		PFLU_RS15370	0.62	-0.2
3,445,996	-		PFLU_RS15370	0.62	+1.7
3,445,996	-		PFLU_RS15370	0.62	+1.6
3,445,996	-		PFLU_RS15370	0.62	-1.6
3,446,008	-		PFLU_RS15370	0.62	-1.7
3,446,088	+		PFLU_RS15370	0.68	+1.0
3,446,088	+		PFLU_RS15370	0.68	+0.3
3,446,088	+		PFLU_RS15370	0.68	-0.7
3,446,088	+		PFLU_RS15370	0.68	+0.3
3,446,089	-		PFLU_RS15370	0.68	-2.0
3,446,089	-		PFLU_RS15370	0.68	+0.1
3,446,089	-		PFLU_RS15370	0.68	+0.1
3,446,089	-		PFLU_RS15370	0.68	+0.8
3,446,089	-		PFLU_RS15370	0.68	+0.8
3,446,149	-		PFLU_RS15370	0.72	-1.2
3,446,149	-		PFLU_RS15370	0.72	+0.6
3,446,150	+		PFLU_RS15370	0.72	+0.3
3,446,151	-		PFLU_RS15370	0.73	+0.1
3,446,151	-		PFLU_RS15370	0.73	-0.5
3,446,151	-		PFLU_RS15370	0.73	+0.2
3,446,397	+				+0.6
3,446,398	-				+0.9
3,446,398	-				+1.2
3,446,400	+				+0.8
3,446,400	+				-0.2
3,446,511	-				-0.8
3,446,518	+				-1.5
3,446,519	-				-0.4
3,446,550	-				+0.2
3,446,574	+				-0.2
3,446,588	-				+0.1
3,446,632	+				-2.8
3,446,632	+				+1.2
3,446,632	+				+0.4
3,446,632	+				-0.9
3,446,633	-				-2.4
3,446,674	+		PFLU_RS15375	0.11	-0.4
3,446,674	+		PFLU_RS15375	0.11	+1.1
3,446,675	-		PFLU_RS15375	0.11	+0.1
3,446,675	-		PFLU_RS15375	0.11	-1.1
3,446,675	-		PFLU_RS15375	0.11	+0.9
3,446,788	+		PFLU_RS15375	0.25	-0.4
3,446,788	+		PFLU_RS15375	0.25	-1.8
3,446,789	-		PFLU_RS15375	0.25	+0.9
3,446,789	-		PFLU_RS15375	0.25	-0.7
3,446,794	+		PFLU_RS15375	0.26	+0.6
3,446,794	+		PFLU_RS15375	0.26	-0.6
3,446,794	+		PFLU_RS15375	0.26	+1.0
3,446,795	-		PFLU_RS15375	0.26	-0.1
3,446,827	+		PFLU_RS15375	0.30	-0.7
3,446,828	-		PFLU_RS15375	0.30	-0.0
3,446,849	-		PFLU_RS15375	0.32	-0.0
3,446,896	+		PFLU_RS15375	0.38	+0.9
3,446,896	+		PFLU_RS15375	0.38	+1.2
3,446,917	+		PFLU_RS15375	0.41	-0.1
3,446,917	+		PFLU_RS15375	0.41	+0.4
3,446,918	-		PFLU_RS15375	0.41	-0.7
3,447,025	+		PFLU_RS15375	0.54	+0.8
3,447,026	-		PFLU_RS15375	0.54	-1.9
3,447,113	+		PFLU_RS15375	0.65	-0.7
3,447,114	-		PFLU_RS15375	0.65	+0.4
3,447,212	-		PFLU_RS15375	0.77	+0.8
3,447,212	-		PFLU_RS15375	0.77	+0.1
3,447,212	-		PFLU_RS15375	0.77	+0.9
3,447,281	-		PFLU_RS15375	0.86	-0.5
3,447,281	-		PFLU_RS15375	0.86	+0.1
3,447,281	-		PFLU_RS15375	0.86	-0.7
3,447,281	-		PFLU_RS15375	0.86	-1.6
3,447,283	+		PFLU_RS15375	0.86	+0.5
3,447,283	+		PFLU_RS15375	0.86	+0.2
3,447,283	+		PFLU_RS15375	0.86	+0.3
3,447,283	+		PFLU_RS15375	0.86	-1.1
3,447,284	-		PFLU_RS15375	0.86	-1.0
3,447,284	-		PFLU_RS15375	0.86	-0.2
3,447,284	-		PFLU_RS15375	0.86	-2.4
3,447,284	-		PFLU_RS15375	0.86	+1.4
3,447,284	-		PFLU_RS15375	0.86	+0.3
3,447,284	-		PFLU_RS15375	0.86	-0.2
3,447,462	-				-0.4
3,447,462	-				+0.5
3,447,500	-				+1.5
3,447,585	+				+0.1
3,447,591	+				-0.1
3,447,642	+				+0.6
3,447,642	+				+0.4
3,447,643	-				+1.2
3,447,643	-				-1.8
3,447,767	+		PFLU_RS15380	0.40	-1.1
3,447,767	+		PFLU_RS15380	0.40	-0.2
3,447,767	+		PFLU_RS15380	0.40	+0.7
3,447,768	-		PFLU_RS15380	0.41	-1.6
3,447,768	-		PFLU_RS15380	0.41	+2.4
3,447,768	-		PFLU_RS15380	0.41	-1.8
3,447,859	+		PFLU_RS15380	0.74	+0.5
3,447,859	+		PFLU_RS15380	0.74	+0.6
3,447,860	-		PFLU_RS15380	0.74	-0.5
3,447,860	-		PFLU_RS15380	0.74	+1.9
3,447,860	-		PFLU_RS15380	0.74	+1.6
3,447,860	-		PFLU_RS15380	0.74	+1.6
3,447,860	-		PFLU_RS15380	0.74	-2.8
3,447,860	-		PFLU_RS15380	0.74	+1.4
3,447,952	+				+1.3
3,447,952	+				+1.0
3,447,952	+				-0.9
3,447,952	+				+0.3
3,447,952	+				+0.8
3,447,952	+				-0.6
3,447,952	+				+0.8
3,447,952	+				-1.0
3,447,952	+				+0.2
3,447,952	+				+0.4
3,447,952	+				-1.3
3,447,952	+				-1.6
3,447,952	+				-0.2
3,447,953	-				+0.5
3,447,953	-				-0.5
3,447,953	-				-0.5
3,447,953	-				-0.2
3,447,953	-				+0.1
3,447,953	-				+0.3
3,447,953	-				+0.3
3,447,953	-				-0.5
3,447,953	-				-1.4
3,447,953	-				+0.8
3,448,102	+				+0.8
3,448,102	+				+0.5
3,448,102	+				-0.2
3,448,102	+				+0.2
3,448,102	+				-0.4
3,448,102	+				+1.5
3,448,102	+				+1.3
3,448,102	+				+0.5
3,448,103	-				+0.6
3,448,103	-				-1.9
3,448,103	-				-0.4
3,448,103	-				+1.1
3,448,103	-				-1.1
3,448,108	+				+0.1
3,448,108	+				+0.3
3,448,108	+				+0.0
3,448,109	-				-1.8
3,448,141	+				-1.6
3,448,141	+				-0.8
3,448,141	+				+0.2
3,448,142	-				-0.4
3,448,180	+				+1.1
3,448,181	-				+0.6
3,448,237	+				-0.6
3,448,237	+				+0.4
3,448,312	+		PFLU_RS15385	0.12	+0.0
3,448,312	+		PFLU_RS15385	0.12	-1.8
3,448,312	+		PFLU_RS15385	0.12	-1.4
3,448,312	+		PFLU_RS15385	0.12	+1.2
3,448,312	+		PFLU_RS15385	0.12	-1.9
3,448,313	-		PFLU_RS15385	0.12	-0.1
3,448,313	-		PFLU_RS15385	0.12	-0.1
3,448,313	-		PFLU_RS15385	0.12	-0.7
3,448,313	-		PFLU_RS15385	0.12	-0.1
3,448,313	-		PFLU_RS15385	0.12	+0.7
3,448,313	-		PFLU_RS15385	0.12	+0.8
3,448,313	-		PFLU_RS15385	0.12	-0.2
3,448,313	-		PFLU_RS15385	0.12	+0.8