Strain Fitness in Pseudomonas sp. S08-1 around OH686_22440

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22435 and OH686_22440 are separated by 52 nucleotidesOH686_22440 and OH686_22445 are separated by 62 nucleotides OH686_22435: OH686_22435 - conserved hypothetical protein, family, at 4,560,187 to 4,561,344 _22435 OH686_22440: OH686_22440 - Translation elongation factor P, at 4,561,397 to 4,561,954 _22440 OH686_22445: OH686_22445 - Transcriptional regulator, LysR family, at 4,562,017 to 4,562,973 _22445 Position (kb) 4561 4562Strain fitness (log2 ratio) -2 -1 0 1at 4561.352 kb on + strandat 4561.352 kb on + strandat 4561.378 kb on + strandat 4561.952 kb on + strandat 4561.952 kb on + strandat 4561.953 kb on - strandat 4561.953 kb on - strandat 4561.958 kb on + strandat 4561.959 kb on - strandat 4561.959 kb on - strandat 4561.967 kb on + strandat 4561.968 kb on - strandat 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.141 kb on + strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.142 kb on - strand, within OH686_22445at 4562.213 kb on + strand, within OH686_22445at 4562.213 kb on + strand, within OH686_22445at 4562.213 kb on + strand, within OH686_22445at 4562.213 kb on + strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.214 kb on - strand, within OH686_22445at 4562.444 kb on + strand, within OH686_22445at 4562.444 kb on + strand, within OH686_22445at 4562.444 kb on + strand, within OH686_22445at 4562.444 kb on + strand, within OH686_22445at 4562.444 kb on + strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.445 kb on - strand, within OH686_22445at 4562.464 kb on + strand, within OH686_22445at 4562.464 kb on + strand, within OH686_22445at 4562.464 kb on + strand, within OH686_22445at 4562.465 kb on - strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.590 kb on + strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.591 kb on - strand, within OH686_22445at 4562.936 kb on + strandat 4562.936 kb on + strandat 4562.936 kb on + strandat 4562.936 kb on + strandat 4562.936 kb on + strandat 4562.937 kb on - strandat 4562.937 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,561,352 + -0.9
4,561,352 + +0.5
4,561,378 + +1.1
4,561,952 + +0.9
4,561,952 + +1.1
4,561,953 - +0.3
4,561,953 - -0.3
4,561,958 + -1.6
4,561,959 - +0.4
4,561,959 - -1.3
4,561,967 + -0.9
4,561,968 - -1.8
4,562,141 + OH686_22445 0.13 -0.1
4,562,141 + OH686_22445 0.13 -0.0
4,562,141 + OH686_22445 0.13 +0.3
4,562,141 + OH686_22445 0.13 +0.2
4,562,141 + OH686_22445 0.13 -0.5
4,562,141 + OH686_22445 0.13 +0.1
4,562,141 + OH686_22445 0.13 -0.7
4,562,141 + OH686_22445 0.13 -1.5
4,562,141 + OH686_22445 0.13 +0.1
4,562,141 + OH686_22445 0.13 -1.4
4,562,141 + OH686_22445 0.13 -0.2
4,562,141 + OH686_22445 0.13 -0.0
4,562,141 + OH686_22445 0.13 +0.2
4,562,141 + OH686_22445 0.13 +0.1
4,562,141 + OH686_22445 0.13 -0.9
4,562,142 - OH686_22445 0.13 -0.4
4,562,142 - OH686_22445 0.13 -0.4
4,562,142 - OH686_22445 0.13 -0.3
4,562,142 - OH686_22445 0.13 -0.1
4,562,142 - OH686_22445 0.13 -0.6
4,562,142 - OH686_22445 0.13 +1.6
4,562,142 - OH686_22445 0.13 -0.6
4,562,142 - OH686_22445 0.13 -0.6
4,562,142 - OH686_22445 0.13 -1.1
4,562,142 - OH686_22445 0.13 -0.8
4,562,142 - OH686_22445 0.13 -0.2
4,562,142 - OH686_22445 0.13 +0.0
4,562,142 - OH686_22445 0.13 -0.5
4,562,142 - OH686_22445 0.13 -0.7
4,562,213 + OH686_22445 0.20 +0.6
4,562,213 + OH686_22445 0.20 -0.5
4,562,213 + OH686_22445 0.20 +0.5
4,562,213 + OH686_22445 0.20 -0.4
4,562,214 - OH686_22445 0.21 +0.1
4,562,214 - OH686_22445 0.21 +0.0
4,562,214 - OH686_22445 0.21 +0.8
4,562,214 - OH686_22445 0.21 +0.1
4,562,214 - OH686_22445 0.21 -0.5
4,562,214 - OH686_22445 0.21 -0.9
4,562,214 - OH686_22445 0.21 +0.7
4,562,214 - OH686_22445 0.21 +0.3
4,562,444 + OH686_22445 0.45 +0.3
4,562,444 + OH686_22445 0.45 -0.2
4,562,444 + OH686_22445 0.45 -0.8
4,562,444 + OH686_22445 0.45 -1.1
4,562,444 + OH686_22445 0.45 -0.9
4,562,445 - OH686_22445 0.45 -0.4
4,562,445 - OH686_22445 0.45 -0.8
4,562,445 - OH686_22445 0.45 -1.5
4,562,445 - OH686_22445 0.45 -1.0
4,562,445 - OH686_22445 0.45 +0.9
4,562,445 - OH686_22445 0.45 -1.4
4,562,464 + OH686_22445 0.47 -1.7
4,562,464 + OH686_22445 0.47 -1.3
4,562,464 + OH686_22445 0.47 +0.5
4,562,465 - OH686_22445 0.47 -1.1
4,562,590 + OH686_22445 0.60 +0.0
4,562,590 + OH686_22445 0.60 -0.7
4,562,590 + OH686_22445 0.60 +0.1
4,562,590 + OH686_22445 0.60 -0.4
4,562,590 + OH686_22445 0.60 +0.3
4,562,590 + OH686_22445 0.60 -1.7
4,562,591 - OH686_22445 0.60 +1.0
4,562,591 - OH686_22445 0.60 +0.1
4,562,591 - OH686_22445 0.60 -0.8
4,562,591 - OH686_22445 0.60 +0.0
4,562,591 - OH686_22445 0.60 -0.9
4,562,591 - OH686_22445 0.60 +0.1
4,562,591 - OH686_22445 0.60 -1.3
4,562,591 - OH686_22445 0.60 -0.3
4,562,591 - OH686_22445 0.60 +0.7
4,562,591 - OH686_22445 0.60 +0.3
4,562,591 - OH686_22445 0.60 +0.7
4,562,936 + +0.1
4,562,936 + -0.6
4,562,936 + +0.1
4,562,936 + -0.1
4,562,936 + +0.1
4,562,937 - -0.4
4,562,937 - -0.7

Or see this region's nucleotide sequence