Strain Fitness in Pseudomonas sp. S08-1 around OH686_19400

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_19390 and OH686_19395 overlap by 20 nucleotidesOH686_19395 and OH686_19400 overlap by 8 nucleotidesOH686_19400 and OH686_19405 overlap by 17 nucleotidesOH686_19405 and OH686_19410 overlap by 10 nucleotidesOH686_19410 and OH686_19415 overlap by 4 nucleotides OH686_19390: OH686_19390 - hypothetical protein, at 3,981,445 to 3,982,242 _19390 OH686_19395: OH686_19395 - DNA replication helicase loader DnaC/DnaI, at 3,982,223 to 3,983,050 _19395 OH686_19400: OH686_19400 - hypothetical protein, at 3,983,043 to 3,983,384 _19400 OH686_19405: OH686_19405 - hypothetical protein, at 3,983,368 to 3,983,610 _19405 OH686_19410: OH686_19410 - CDS, at 3,983,601 to 3,983,726 _19410 OH686_19415: OH686_19415 - Phage integrase, at 3,983,723 to 3,984,703 _19415 Position (kb) 3983 3984Strain fitness (log2 ratio) -3 -2 -1 0 1at 3982.096 kb on - strand, within OH686_19390at 3982.231 kb on + strandat 3982.231 kb on + strandat 3982.232 kb on - strandat 3982.232 kb on - strandat 3982.232 kb on - strandat 3982.240 kb on + strandat 3982.241 kb on - strandat 3982.337 kb on + strand, within OH686_19395at 3982.337 kb on + strand, within OH686_19395at 3982.337 kb on + strand, within OH686_19395at 3982.337 kb on + strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.338 kb on - strand, within OH686_19395at 3982.501 kb on + strand, within OH686_19395at 3982.502 kb on - strand, within OH686_19395at 3982.710 kb on - strand, within OH686_19395at 3982.710 kb on - strand, within OH686_19395at 3982.710 kb on - strand, within OH686_19395at 3982.752 kb on - strand, within OH686_19395at 3982.842 kb on - strand, within OH686_19395at 3983.305 kb on - strand, within OH686_19400at 3983.305 kb on - strand, within OH686_19400at 3983.305 kb on - strand, within OH686_19400at 3983.455 kb on + strand, within OH686_19405at 3983.455 kb on + strand, within OH686_19405at 3983.455 kb on + strand, within OH686_19405at 3983.455 kb on + strand, within OH686_19405at 3983.455 kb on + strand, within OH686_19405at 3983.456 kb on - strand, within OH686_19405at 3983.456 kb on - strand, within OH686_19405at 3983.456 kb on - strand, within OH686_19405at 3983.456 kb on - strand, within OH686_19405at 3983.456 kb on - strand, within OH686_19405at 3983.456 kb on - strand, within OH686_19405at 3983.456 kb on - strand, within OH686_19405at 3983.601 kb on - strandat 3983.601 kb on - strandat 3983.601 kb on - strandat 3983.722 kb on + strandat 3983.722 kb on + strandat 3983.722 kb on + strandat 3983.723 kb on - strandat 3983.723 kb on - strandat 3983.723 kb on - strandat 3983.723 kb on - strandat 3983.813 kb on + strandat 3983.813 kb on + strandat 3983.814 kb on - strandat 3983.814 kb on - strandat 3983.814 kb on - strandat 3983.814 kb on - strandat 3983.814 kb on - strandat 3983.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,982,096 - OH686_19390 0.82 -0.0
3,982,231 + -0.4
3,982,231 + +0.2
3,982,232 - -0.1
3,982,232 - -0.4
3,982,232 - -1.3
3,982,240 + -2.9
3,982,241 - +1.0
3,982,337 + OH686_19395 0.14 -0.0
3,982,337 + OH686_19395 0.14 -0.9
3,982,337 + OH686_19395 0.14 -0.0
3,982,337 + OH686_19395 0.14 -1.2
3,982,338 - OH686_19395 0.14 -1.7
3,982,338 - OH686_19395 0.14 -1.1
3,982,338 - OH686_19395 0.14 +0.3
3,982,338 - OH686_19395 0.14 +0.3
3,982,338 - OH686_19395 0.14 +0.2
3,982,338 - OH686_19395 0.14 -0.5
3,982,338 - OH686_19395 0.14 +0.0
3,982,338 - OH686_19395 0.14 +0.9
3,982,338 - OH686_19395 0.14 +0.5
3,982,338 - OH686_19395 0.14 +1.7
3,982,338 - OH686_19395 0.14 -1.1
3,982,338 - OH686_19395 0.14 -0.2
3,982,338 - OH686_19395 0.14 +0.7
3,982,501 + OH686_19395 0.34 -0.0
3,982,502 - OH686_19395 0.34 -1.0
3,982,710 - OH686_19395 0.59 +0.4
3,982,710 - OH686_19395 0.59 -0.8
3,982,710 - OH686_19395 0.59 +0.7
3,982,752 - OH686_19395 0.64 +0.0
3,982,842 - OH686_19395 0.75 -0.4
3,983,305 - OH686_19400 0.77 -0.9
3,983,305 - OH686_19400 0.77 -1.4
3,983,305 - OH686_19400 0.77 -0.4
3,983,455 + OH686_19405 0.36 -0.6
3,983,455 + OH686_19405 0.36 +0.1
3,983,455 + OH686_19405 0.36 -1.0
3,983,455 + OH686_19405 0.36 -1.2
3,983,455 + OH686_19405 0.36 -0.4
3,983,456 - OH686_19405 0.36 +0.1
3,983,456 - OH686_19405 0.36 +0.0
3,983,456 - OH686_19405 0.36 +0.2
3,983,456 - OH686_19405 0.36 +0.1
3,983,456 - OH686_19405 0.36 +0.4
3,983,456 - OH686_19405 0.36 +1.1
3,983,456 - OH686_19405 0.36 +1.7
3,983,601 - +1.0
3,983,601 - -0.4
3,983,601 - +0.6
3,983,722 + -1.0
3,983,722 + -0.6
3,983,722 + -0.5
3,983,723 - -0.1
3,983,723 - -0.6
3,983,723 - -0.3
3,983,723 - +0.4
3,983,813 + -0.6
3,983,813 + -0.0
3,983,814 - -0.3
3,983,814 - -1.0
3,983,814 - -0.3
3,983,814 - -0.0
3,983,814 - -0.9
3,983,814 - -0.1

Or see this region's nucleotide sequence