Strain Fitness in Pseudomonas sp. S08-1 around OH686_09280

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09275 and OH686_09280 are separated by 128 nucleotidesOH686_09280 and OH686_09285 are separated by 210 nucleotides OH686_09275: OH686_09275 - DNA-3-methyladenine glycosylase II , at 1,894,365 to 1,895,252 _09275 OH686_09280: OH686_09280 - Methyl-accepting chemotaxis sensor/transducer protein, at 1,895,381 to 1,896,697 _09280 OH686_09285: OH686_09285 - lipoyl synthase, at 1,896,908 to 1,897,960 _09285 Position (kb) 1895 1896 1897Strain fitness (log2 ratio) -1 0 1 2at 1894.386 kb on + strandat 1894.386 kb on + strandat 1894.386 kb on + strandat 1894.386 kb on + strandat 1894.386 kb on + strandat 1894.386 kb on + strandat 1894.386 kb on + strandat 1894.386 kb on + strandat 1894.386 kb on + strandat 1894.387 kb on - strandat 1894.387 kb on - strandat 1894.387 kb on - strandat 1894.387 kb on - strandat 1894.387 kb on - strandat 1894.387 kb on - strandat 1894.387 kb on - strandat 1894.387 kb on - strandat 1894.388 kb on + strandat 1894.425 kb on + strandat 1894.426 kb on - strandat 1894.440 kb on + strandat 1894.440 kb on + strandat 1894.441 kb on - strandat 1894.555 kb on + strand, within OH686_09275at 1894.555 kb on + strand, within OH686_09275at 1894.555 kb on + strand, within OH686_09275at 1894.555 kb on + strand, within OH686_09275at 1894.555 kb on + strand, within OH686_09275at 1894.556 kb on - strand, within OH686_09275at 1894.556 kb on - strand, within OH686_09275at 1894.556 kb on - strand, within OH686_09275at 1894.556 kb on - strand, within OH686_09275at 1894.556 kb on - strand, within OH686_09275at 1894.556 kb on - strand, within OH686_09275at 1894.662 kb on + strand, within OH686_09275at 1894.662 kb on + strand, within OH686_09275at 1894.662 kb on + strand, within OH686_09275at 1894.663 kb on - strand, within OH686_09275at 1894.663 kb on - strand, within OH686_09275at 1894.727 kb on + strand, within OH686_09275at 1894.727 kb on + strand, within OH686_09275at 1894.728 kb on - strand, within OH686_09275at 1894.728 kb on - strand, within OH686_09275at 1894.728 kb on - strand, within OH686_09275at 1894.728 kb on - strand, within OH686_09275at 1895.294 kb on + strandat 1895.294 kb on + strandat 1895.294 kb on + strandat 1895.294 kb on + strandat 1895.294 kb on + strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.295 kb on - strandat 1895.419 kb on - strandat 1895.462 kb on + strandat 1895.462 kb on + strandat 1895.463 kb on - strandat 1895.463 kb on - strandat 1895.463 kb on - strandat 1895.543 kb on + strand, within OH686_09280at 1895.543 kb on + strand, within OH686_09280at 1895.544 kb on - strand, within OH686_09280at 1895.615 kb on + strand, within OH686_09280at 1895.615 kb on + strand, within OH686_09280at 1895.615 kb on + strand, within OH686_09280at 1895.616 kb on - strand, within OH686_09280at 1895.616 kb on - strand, within OH686_09280at 1895.616 kb on - strand, within OH686_09280at 1895.616 kb on - strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.981 kb on + strand, within OH686_09280at 1896.080 kb on + strand, within OH686_09280at 1896.080 kb on + strand, within OH686_09280at 1896.080 kb on + strand, within OH686_09280at 1896.080 kb on + strand, within OH686_09280at 1896.081 kb on - strand, within OH686_09280at 1896.081 kb on - strand, within OH686_09280at 1896.081 kb on - strand, within OH686_09280at 1896.081 kb on - strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.194 kb on + strand, within OH686_09280at 1896.194 kb on + strand, within OH686_09280at 1896.194 kb on + strand, within OH686_09280at 1896.195 kb on - strand, within OH686_09280at 1896.247 kb on - strand, within OH686_09280at 1896.247 kb on - strand, within OH686_09280at 1896.737 kb on + strandat 1896.737 kb on + strandat 1896.737 kb on + strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.834 kb on + strandat 1896.834 kb on + strandat 1896.835 kb on - strandat 1896.835 kb on - strandat 1896.835 kb on - strandat 1896.835 kb on - strandat 1896.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,894,386 + -1.3
1,894,386 + +0.2
1,894,386 + +0.1
1,894,386 + +0.2
1,894,386 + +0.1
1,894,386 + +1.0
1,894,386 + +0.5
1,894,386 + -0.6
1,894,386 + -0.1
1,894,387 - +0.0
1,894,387 - +1.4
1,894,387 - +0.4
1,894,387 - +0.2
1,894,387 - +0.3
1,894,387 - -0.4
1,894,387 - +0.2
1,894,387 - -0.0
1,894,388 + -0.4
1,894,425 + -0.2
1,894,426 - -0.9
1,894,440 + -0.5
1,894,440 + -0.4
1,894,441 - -0.3
1,894,555 + OH686_09275 0.21 +0.2
1,894,555 + OH686_09275 0.21 -0.7
1,894,555 + OH686_09275 0.21 +0.1
1,894,555 + OH686_09275 0.21 +0.2
1,894,555 + OH686_09275 0.21 +0.3
1,894,556 - OH686_09275 0.22 +0.5
1,894,556 - OH686_09275 0.22 -0.7
1,894,556 - OH686_09275 0.22 -0.3
1,894,556 - OH686_09275 0.22 +0.5
1,894,556 - OH686_09275 0.22 -0.1
1,894,556 - OH686_09275 0.22 +0.9
1,894,662 + OH686_09275 0.33 +0.1
1,894,662 + OH686_09275 0.33 +0.1
1,894,662 + OH686_09275 0.33 -0.9
1,894,663 - OH686_09275 0.34 -0.2
1,894,663 - OH686_09275 0.34 +0.5
1,894,727 + OH686_09275 0.41 -0.2
1,894,727 + OH686_09275 0.41 +0.4
1,894,728 - OH686_09275 0.41 -0.0
1,894,728 - OH686_09275 0.41 -1.1
1,894,728 - OH686_09275 0.41 -0.2
1,894,728 - OH686_09275 0.41 +0.7
1,895,294 + -0.4
1,895,294 + -0.1
1,895,294 + +0.9
1,895,294 + -0.4
1,895,294 + -0.8
1,895,295 - +0.1
1,895,295 - -0.3
1,895,295 - +1.6
1,895,295 - +0.2
1,895,295 - +0.1
1,895,295 - +1.1
1,895,295 - -1.0
1,895,295 - -0.9
1,895,295 - -0.6
1,895,295 - +0.5
1,895,295 - +2.4
1,895,295 - -0.4
1,895,295 - -0.7
1,895,295 - -0.0
1,895,295 - -0.1
1,895,295 - -1.0
1,895,419 - -0.8
1,895,462 + +0.1
1,895,462 + -0.0
1,895,463 - +0.1
1,895,463 - +0.4
1,895,463 - -0.6
1,895,543 + OH686_09280 0.12 +0.0
1,895,543 + OH686_09280 0.12 -0.8
1,895,544 - OH686_09280 0.12 +0.4
1,895,615 + OH686_09280 0.18 -0.1
1,895,615 + OH686_09280 0.18 +0.1
1,895,615 + OH686_09280 0.18 -1.5
1,895,616 - OH686_09280 0.18 -0.5
1,895,616 - OH686_09280 0.18 +0.9
1,895,616 - OH686_09280 0.18 +0.2
1,895,616 - OH686_09280 0.18 -1.0
1,895,966 + OH686_09280 0.44 +0.3
1,895,966 + OH686_09280 0.44 +0.4
1,895,966 + OH686_09280 0.44 -0.6
1,895,966 + OH686_09280 0.44 -0.1
1,895,966 + OH686_09280 0.44 +0.4
1,895,966 + OH686_09280 0.44 +0.4
1,895,966 + OH686_09280 0.44 -0.8
1,895,966 + OH686_09280 0.44 +0.4
1,895,967 - OH686_09280 0.44 -0.6
1,895,967 - OH686_09280 0.44 -0.4
1,895,967 - OH686_09280 0.44 +0.8
1,895,967 - OH686_09280 0.44 +0.1
1,895,967 - OH686_09280 0.44 +0.5
1,895,967 - OH686_09280 0.44 +0.4
1,895,967 - OH686_09280 0.44 -0.9
1,895,967 - OH686_09280 0.44 -0.1
1,895,967 - OH686_09280 0.44 -0.2
1,895,967 - OH686_09280 0.44 +0.1
1,895,981 + OH686_09280 0.46 -1.4
1,896,080 + OH686_09280 0.53 +1.4
1,896,080 + OH686_09280 0.53 -0.3
1,896,080 + OH686_09280 0.53 +0.5
1,896,080 + OH686_09280 0.53 -0.5
1,896,081 - OH686_09280 0.53 +0.1
1,896,081 - OH686_09280 0.53 -0.8
1,896,081 - OH686_09280 0.53 +0.1
1,896,081 - OH686_09280 0.53 -0.1
1,896,113 + OH686_09280 0.56 -0.4
1,896,113 + OH686_09280 0.56 -0.2
1,896,113 + OH686_09280 0.56 -0.5
1,896,113 + OH686_09280 0.56 +0.6
1,896,113 + OH686_09280 0.56 +0.7
1,896,113 + OH686_09280 0.56 -0.3
1,896,113 + OH686_09280 0.56 +0.2
1,896,113 + OH686_09280 0.56 +0.3
1,896,113 + OH686_09280 0.56 -0.6
1,896,113 + OH686_09280 0.56 +0.2
1,896,113 + OH686_09280 0.56 -0.2
1,896,113 + OH686_09280 0.56 -0.7
1,896,113 + OH686_09280 0.56 +1.2
1,896,113 + OH686_09280 0.56 -0.0
1,896,113 + OH686_09280 0.56 -0.0
1,896,113 + OH686_09280 0.56 -0.6
1,896,113 + OH686_09280 0.56 +1.2
1,896,113 + OH686_09280 0.56 +0.2
1,896,113 + OH686_09280 0.56 +0.2
1,896,113 + OH686_09280 0.56 +0.6
1,896,113 + OH686_09280 0.56 +1.0
1,896,113 + OH686_09280 0.56 +1.2
1,896,113 + OH686_09280 0.56 +0.4
1,896,113 + OH686_09280 0.56 +0.2
1,896,113 + OH686_09280 0.56 -0.1
1,896,114 - OH686_09280 0.56 +0.1
1,896,114 - OH686_09280 0.56 -0.2
1,896,114 - OH686_09280 0.56 -0.1
1,896,114 - OH686_09280 0.56 -0.2
1,896,114 - OH686_09280 0.56 +0.9
1,896,114 - OH686_09280 0.56 +0.3
1,896,114 - OH686_09280 0.56 -0.2
1,896,114 - OH686_09280 0.56 +0.1
1,896,114 - OH686_09280 0.56 +0.2
1,896,114 - OH686_09280 0.56 -1.0
1,896,114 - OH686_09280 0.56 +0.0
1,896,114 - OH686_09280 0.56 +0.0
1,896,114 - OH686_09280 0.56 +0.6
1,896,114 - OH686_09280 0.56 +1.4
1,896,114 - OH686_09280 0.56 +0.6
1,896,114 - OH686_09280 0.56 +0.2
1,896,114 - OH686_09280 0.56 -0.5
1,896,115 + OH686_09280 0.56 -0.5
1,896,115 + OH686_09280 0.56 -0.4
1,896,115 + OH686_09280 0.56 -0.0
1,896,115 + OH686_09280 0.56 +0.3
1,896,115 + OH686_09280 0.56 -0.9
1,896,115 + OH686_09280 0.56 -0.1
1,896,115 + OH686_09280 0.56 +0.2
1,896,115 + OH686_09280 0.56 -0.1
1,896,115 + OH686_09280 0.56 -0.1
1,896,115 + OH686_09280 0.56 -0.1
1,896,116 - OH686_09280 0.56 +0.6
1,896,116 - OH686_09280 0.56 +0.7
1,896,116 - OH686_09280 0.56 +0.3
1,896,116 - OH686_09280 0.56 +0.2
1,896,116 - OH686_09280 0.56 -0.4
1,896,116 - OH686_09280 0.56 +1.0
1,896,116 - OH686_09280 0.56 -0.2
1,896,116 - OH686_09280 0.56 +0.6
1,896,116 - OH686_09280 0.56 +0.2
1,896,116 - OH686_09280 0.56 -0.8
1,896,116 - OH686_09280 0.56 +0.1
1,896,116 - OH686_09280 0.56 +0.5
1,896,116 - OH686_09280 0.56 -1.1
1,896,116 - OH686_09280 0.56 -0.6
1,896,116 - OH686_09280 0.56 -0.5
1,896,116 - OH686_09280 0.56 +0.1
1,896,116 - OH686_09280 0.56 +1.0
1,896,194 + OH686_09280 0.62 +1.1
1,896,194 + OH686_09280 0.62 -0.5
1,896,194 + OH686_09280 0.62 -1.5
1,896,195 - OH686_09280 0.62 +0.3
1,896,247 - OH686_09280 0.66 +0.6
1,896,247 - OH686_09280 0.66 +0.2
1,896,737 + +0.8
1,896,737 + +0.2
1,896,737 + +0.8
1,896,738 - -0.9
1,896,738 - -0.1
1,896,738 - -0.1
1,896,738 - -0.1
1,896,738 - +0.2
1,896,738 - -1.1
1,896,738 - +0.1
1,896,834 + -0.3
1,896,834 + -0.2
1,896,835 - -0.5
1,896,835 - -1.3
1,896,835 - +0.4
1,896,835 - +0.3
1,896,849 - -1.5

Or see this region's nucleotide sequence